Protein Info for mRNA_7316 in Rhodosporidium toruloides IFO0880

Name: 15684
Annotation: KOG4178 Soluble epoxide hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 32 to 48 (17 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 30 to 265 (236 residues), 72.7 bits, see alignment E=6.2e-24 PF12697: Abhydrolase_6" amino acids 31 to 267 (237 residues), 57.5 bits, see alignment E=4.7e-19 PF12146: Hydrolase_4" amino acids 57 to 264 (208 residues), 43 bits, see alignment E=5e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>mRNA_7316 KOG4178 Soluble epoxide hydrolase (Rhodosporidium toruloides IFO0880)
MSSHAYSLFERHDGLSFAYKVLGRNQHATPLVMVHGLSAVGLIDWMPLAASIAKHRPVLI
FDNRGIGSSYIPKEKAGDTYDVHDMANDVVELVRHVGWREIDLLGFSMGGMIAQTVLVTP
RLPFKIRHVVLAATSAKPAHSDLLQAIPQTPGGELSYEDKVKLVTPFVYVGYDPKFVQDP
KNKEILDRRVRESVESRRPARTVQNQVGVIAGYDVRKQLSSVPSTLPVLVFHGTLDRSVY
YTEASYIRKGIPHAQFLSLDGVGHMWYDYFTLDWWTDLLNRFLDGGDVSSLVPSPSSSPR
KAKL