Protein Info for mRNA_7320 in Rhodosporidium toruloides IFO0880

Name: 15688
Annotation: BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 transmembrane" amino acids 41 to 64 (24 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 167 to 191 (25 residues), see Phobius details amino acids 225 to 247 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (336 amino acids)

>mRNA_7320 BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct... (Rhodosporidium toruloides IFO0880)
MPIELLGLTPAYTVVGAYRLATDPNLYRPVWARSRKSLQRALLFAVPYSVLALPLTRLYV
TFVLSRSPLSPKNVHEAAYFGVSPVAYTTWALLAGQVSALIEFLLKRELRKSREEVYEQT
VRSRGKPADWWQPYTEEWLVPPVDRAKRAAEKQSFYVRLSSPLVRIVLLRVLLTPLSFIP
GLALCVLSAIRSLTMGRLLHRSYFAAKKMTPFEVELWLAEREVGYRLFGFAAALLERIPL
VGLVFSISNRIGAAMWAHDLEKRQHAFRSGELKPTKVYQSKTAVIAAQQRASDIPDEVLH
GPGGFPSTKGPVKIAGDGSEIGRVAPAPPPLPPREL