Protein Info for mRNA_7340 in Rhodosporidium toruloides IFO0880

Name: 15708
Annotation: K08073 PNKP bifunctional polynucleotide phosphatase/kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 TIGR01664: DNA 3'-phosphatase" amino acids 93 to 268 (176 residues), 136.1 bits, see alignment E=1.1e-43 PF08645: PNK3P" amino acids 98 to 268 (171 residues), 140.8 bits, see alignment E=3.5e-45 TIGR01662: HAD hydrolase, family IIIA" amino acids 98 to 209 (112 residues), 70.3 bits, see alignment E=1.7e-23 PF13671: AAA_33" amino acids 317 to 450 (134 residues), 44 bits, see alignment E=2.6e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (509 amino acids)

>mRNA_7340 K08073 PNKP bifunctional polynucleotide phosphatase/kinase (Rhodosporidium toruloides IFO0880)
MAQHAAKRLKVDLDLTVASSSPATSTTRHSSTMATSTRTSTASTTVTATTAPPAPKLASI
FAPPASSKGKWCKNLGGSDKGKMGCGHYVWGQPKGSAKVAAFDLDGVVIKTPSGRVVAKD
KDDWGFWATQVSRRIRELHQQGYAIVILTNQALNESSKINFKAKLPLICSALDVPLHTFA
AWGRDEYRKPAPGMWKAYVEHFNDGIAIGERAFRLRSSKSEFDFPSSADYTESLFVGDAA
GRPGDHNDSDRKLAINCGLRFFTPEEFFLGAPVNHNWSLLGWDPSTYDHNAPLYSPASSP
LLPRRLSEFDQEQPPEVIVFVGYPGSGKTSFFKKHFEPKGYVHVNQDTLKTRDACVRLVR
KCLSSTSPRNCVVDNTSPASSTRAEYISLIRSEFPDVKIRCFHFTAGVELAMHNSVYRAL
YDAVDKGNGKKREVLPEIAFNSFRSRFEMPTLAEGFDELKRINFKFDGTPAQLAKWQQWL
ADIYPYSARGITKPKTTTAAGNSKKRSRK