Protein Info for mRNA_7343 in Rhodosporidium toruloides IFO0880

Name: 15711
Annotation: K04798 pfdB, PFDN6 prefoldin beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 138 PF01920: Prefoldin_2" amino acids 18 to 117 (100 residues), 67.7 bits, see alignment E=4.1e-23

Best Hits

Swiss-Prot: 44% identical to PFD6_HUMAN: Prefoldin subunit 6 (PFDN6) from Homo sapiens

KEGG orthology group: K04798, prefoldin beta subunit (inferred from 54% identity to lbc:LACBIDRAFT_242739)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (138 amino acids)

>mRNA_7343 K04798 pfdB, PFDN6 prefoldin beta subunit (Rhodosporidium toruloides IFO0880)
MSTSGTALEVKLQAASSAYTKLESDYAKAVEARQRLDAQKTENESVKKELSALTPNNNVF
KLVGPILMKQEPDEAKQNVDKRLEWIGGEIKRVETNLKDLETKLETRKVEIVNLQGQYQQ
QLQASGAAPSAGLAAVAA