Protein Info for mRNA_7348 in Rhodosporidium toruloides IFO0880

Name: 15716
Annotation: KOG0364 Chaperonin complex component, TCP-1 gamma subunit (CCT3)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 PF00118: Cpn60_TCP1" amino acids 38 to 222 (185 residues), 182.9 bits, see alignment E=5.1e-58

Best Hits

Predicted SEED Role

"Heat shock protein 60 family chaperone GroEL / Thermosome subunit" in subsystem GroEL GroES or Staphylococcal pathogenicity islands SaPI or Thermosome, archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>mRNA_7348 KOG0364 Chaperonin complex component, TCP-1 gamma subunit (CCT3) (Rhodosporidium toruloides IFO0880)
MSLVSCAPPFPSLGNRLRPLFCFRYLSSRQGCLLRRQSDVGTKCGLFYVEELGDECFTFL
TKCQDPKACTILLRGPSKDGLHEVDRNLADAMAVARNVVFDPRLAPGGGATEMAISVGLA
KKARAIEGVQGWPMRAVSDAMEVIPRTLVQNCGGNAIRTLTALRAKHAAGEHSFGVDGET
GKVVDMKEYGLYESAAVKVQTLKTAIESACLLLRVDDIVSAKRPQGEGGPGRRSPTGKPA
QMRKTDNMVAAD