Protein Info for mRNA_7390 in Rhodosporidium toruloides IFO0880

Name: 15758
Annotation: HMMPfam-Ubiquinol-cytochrome C reductase hinge protein-PF02320,SUPERFAMILY--SSF81531

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 PF02320: UCR_hinge" amino acids 71 to 136 (66 residues), 87.8 bits, see alignment E=2.3e-29

Best Hits

KEGG orthology group: K00416, ubiquinol-cytochrome c reductase subunit 6 [EC: 1.10.2.2] (inferred from 38% identity to ure:UREG_05272)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.10.2.2

Use Curated BLAST to search for 1.10.2.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>mRNA_7390 HMMPfam-Ubiquinol-cytochrome C reductase hinge protein-PF02320,SUPERFAMILY--SSF81531 (Rhodosporidium toruloides IFO0880)
MLSSLFESFFPSDLRMESQAGVHAGESQATQSDTSTSTISDPEEAQQHKDELGERQQQAQ
EESEDEEDPEDQAEAIREACGNTKVCKEFKHHLEECGERLAAGKTIVPNETCVEELFHYM
HCVDECAAPKIFAALK