Protein Info for mRNA_7394 in Rhodosporidium toruloides IFO0880

Name: 15762
Annotation: KOG0569 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 64 to 84 (21 residues), see Phobius details amino acids 96 to 118 (23 residues), see Phobius details amino acids 124 to 141 (18 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 266 to 288 (23 residues), see Phobius details amino acids 303 to 323 (21 residues), see Phobius details amino acids 330 to 350 (21 residues), see Phobius details amino acids 361 to 381 (21 residues), see Phobius details amino acids 393 to 415 (23 residues), see Phobius details amino acids 430 to 449 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 15 to 444 (430 residues), 266.9 bits, see alignment E=3.6e-83 TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 49 to 445 (397 residues), 248.1 bits, see alignment E=7.8e-78 PF07690: MFS_1" amino acids 50 to 401 (352 residues), 75.9 bits, see alignment E=3e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (451 amino acids)

>mRNA_7394 KOG0569 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MPFEHLTRFLLTVSWILTSAVQYGYHISSLNSSSSSLICSASSIPPSRKGLFSLPTCLDM
TDSAFGLITSAYTVGGLGGSLNAGGMIERWGKKGTAIKSAGVIVLGALAVSLGSYVWVLV
VGRILIGVSCGIATVLVPLYLSSVAPPAIAGSIGILTQISINVGIFAAQGFSIPLSTPGT
GQWRLVSLISAGLAVVQILTGPLVPESRGKDEKVHDSDADEERAPLAADEGDDDSDSTDY
RRKADSEKSLSVAEVLKSRDPAVKKAMWTLVATMVFQQFSGINAVMYYSTSILTAVNPAS
AKTVSLLVTLVNLIMTFPAIFLIDRLGRRTLLLLSLTLMCFSTALLGWSINNHYFRVASG
GIMAFVVSFALGLGPVPFVMVGEMPPREAKSATASIAVAVNWISNLLIGLLFLPLRDYLA
RGEDGEGSGTVFYVFTAWTGLGVVVLARLMR