Protein Info for mRNA_7401 in Rhodosporidium toruloides IFO0880

Name: 15769
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 932 transmembrane" amino acids 389 to 410 (22 residues), see Phobius details PF00172: Zn_clus" amino acids 33 to 64 (32 residues), 32.5 bits, see alignment (E = 3.8e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (932 amino acids)

>mRNA_7401 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MSSSRSDAGGSRGAQAAGRAVGKPARLARSRAACAECHKAKQRCDGPPGPCHRCKTWGVD
CVFPSSAGPAPSKTNLSRSSTPPVRQTSRHATPAQPPAPAPAPPAHAQPAVPAAPAPDVA
EQLRLMNERLASLESALARASTLSSPASTSGPHAPVISIPADHAHRHALHAGASQAGSAS
SPMTGVTPASLNDTQHDGVGANAVETAGEAMAIEGLVDLGSAQGRNGDHANGSAGDGVAG
HAWDSVKPDVLGRGIMTVEECEAEFDLFFNNIQPWAGLLSTTLDRQPLVVRERSPLLFHA
ILVTTLYYRPRTPATMILYRAVSSILDSILAPQILCPQPDQLSFDFVRAVQLLILYKPVQ
FSALHARGMSDPAQIESASKINVRASWMLRLLVSRVSAFIGLPSIATTFAQAFANQHVQP
IPEEIISQERLYLGCVFHESHGAIQSGKSANFTPQDACKTTRLFATLKRQPSDVRLAASV
ELVALAATALSARTEAGILETEDLRKFDEEMDAWVEYWAPLVSFASNESGGEDMIAWSLF
YPYMCFTKLTVRGFAFNKWKAERKARALAARSQEAGTDGAKTPVAPTLGAEERESIAKAV
EVAEEMMFAVALEGRLLRTDMGRRRGGKVEWKSGPGPLTPDPQVVETLKWASDSLTCVMF
SYPLIFLAKLANEGLLRSDLTVIAAGSSPLPPTPMSPEDKLCRLFQLGADLLDAIAPNPH
HPSVRQAAFLRKVWDAGISGRRQATSAPSSPRLIPSGAAAVPSFQALSQQLHQAQQQQQQ
QQARPTTLAPPVFPPFAPARPAAPQPHTSFASIAATGSAAAALSAYTDFSLASSYNPSPI
TSPPSGYAHNAAHPSMAAQLQQARSTAQSAPTPAQPVLVEDPFAALLSGVSPTIFEGGQG
FFSLDGEFDWPTMSGASAGEGFGGTGYGGMQF