Protein Info for mRNA_7405 in Rhodosporidium toruloides IFO0880

Name: 15773
Annotation: KOG1589 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 transmembrane" amino acids 28 to 44 (17 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details PF03650: MPC" amino acids 15 to 118 (104 residues), 143.5 bits, see alignment E=1.4e-46

Best Hits

Swiss-Prot: 43% identical to MPC2_SCHPO: Probable mitochondrial pyruvate carrier 2 (mpc2) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 66% identity to cnb:CNBA0800)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (134 amino acids)

>mRNA_7405 KOG1589 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MAAPAAASSGVSSKLTQLWNSPAGPKTVFFWAPMFKWGLVAAGLKDLSRPAEVISIPQNL
ALTATGLIWVRYSFVITPVNYSLAAVNAFVAGTGITSLYRAFDWQRKSPEEQAKVRLEYA
EAQKTKDAAKALAA