Protein Info for mRNA_7409 in Rhodosporidium toruloides IFO0880

Name: 15777
Annotation: HMMPfam-Nucleoporin subcomplex protein binding to Pom34-PF10487

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2003 transmembrane" amino acids 368 to 389 (22 residues), see Phobius details amino acids 749 to 773 (25 residues), see Phobius details amino acids 1574 to 1592 (19 residues), see Phobius details PF10487: Nup188" amino acids 39 to 334 (296 residues), 37 bits, see alignment E=5.7e-14 amino acids 605 to 985 (381 residues), 81 bits, see alignment E=2.9e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2003 amino acids)

>mRNA_7409 HMMPfam-Nucleoporin subcomplex protein binding to Pom34-PF10487 (Rhodosporidium toruloides IFO0880)
MALVQADESPNSRSLSWANALVLLESAAVTGTVPPSASSFLSSHLAELQRPHDPFPRSTQ
SKTQLASGKLELAKRQVEVAKEEQTAALEVADRFSLDEVEAFLAVRSARREKGKAKAEKL
SEDEWDRVTAWVFEERMAVIGIVALLLRTREFLDSQTDTFTSTLLSAFASRTSQSLPEAV
RASPAHSLFWTKQLVREQKALLELVFLVYYSPRPADGPELARVLDIIKSTEWGQRQELFG
YFDAETQGMEKELADLLTLIAIEAMNLENAMEQEYPIGAPGEQGVDPKSIFAPAHLIKVN
EAVEALVRLDSERSSPVLIGWAFLLSKVTTSLLERGVPESYHDFAEQSLRVEAPSSSSSR
SSTQPLFQLYAAHALSPASSLFPVLLSILRSPLLGQSAQRESFSSFAVTEPNAVGYLSVL
RGLVTSLPNLIRLPFLTSTQLNGLYEVFSALYGNPSSALLCAQFWEDQAVVAAAEAAPET
SMLLDRTAQSAGEAEIVELARSRFPIQFGGLVSLVRSLTAGVAGLLPPDHADGAVASSAG
ASTDDELLAAKCAQSTFAYLATLPTLTHVVPSGPSVTPLPYETATYPDPDTGYSYRVSRP
IGVSRSVVIPTGVQGRLISQHGTKPVVVAWDVEWSAWRLFADVLEDYAGMKRPKVDVFGS
KEASTDELPMSWDSEEEQERDVTAVLDILRITLRNDHTLAPALIDHLSSSPGRKVPPGTA
PPRYDLVEVLFRILERSLTPNPNRPAPTALVSSLVGLVAALLPSFPGIVWTFLRGSALLF
PSSKMAAYSRTASIGSSSSGSAILQAEKLAGQCPVTLSLLSLVHALVLEEQVAACVTSAE
YRDIKHGVLVRALGWIRDEIWPMFGSWRFASLAEKYELAKRCMQLYKLVMEEGEVAGASP
VVQVVTDALLSAKATVAQLSPLSSTLAGGPDGILLLRKAGRYADAQALEDLVDSALGLSL
GLLRLRRRSKSATSSLFEKLCLSPSSAASFGASSATSFGFSAVLSGQEPTRRPELLESLA
RFVVAPLDTKLAVQAARLVSLLCLGSSTDDEGASSNGRTSPAHAPASMSTLLGGSDGVEK
IVLALLAVADDSFAAQDLKVAVWDLISSVVDSQPGLALLVVTGRAYPYPTAVNDPVPASA
IDDKGKTKEATPAEKSVQELAKSLAPKPPQPLPRTAISLALEKLASWSDSWKEEPAVLAA
VLRFLDFTWQHMVDFGTALDDLRTKGSTWDSLVKIAFESIGPEPAEEDSVAAYCHRAVAH
AHAVRVVALDVQGALSKPKPEDAASTKALLSALGDSRKVKSAVTHAIATSCAPDLHQGIY
ALVQSAFPNLHLDTLRNPASPHPLDDAREFGTGYLYAIPLVRRRLDGYMADPDAMIAHDT
FENVIAQTAKLNLNFSLLEAQILATRSWRQLLEVVSPLMRKDVAAVMALTASSVAGEIAQ
ESRAGQVMLTVQAERLSILLAIVQVLAIVDASKSKDVLVDLITDLAAVFSNEALDPLESV
ARRATPAFHATLFRAIFFVVRQVNALEPSTLAHEQKTKVSAAIESLLRDMFSATRDLLAI
ARATKDVESEQDLVLAVVVVSQLLASSFVPPAPVWLAHIHSIDLLRSAFEVFVNMDQSEP
GRPLCAQHVLDLCLAFATSSPRAAEQLPLDGAMTALTDNALTSVIEAGAVSLVSPTDGAR
TPQHEIWTGMLRLVVALVSALGDSTRFVEQDVTGFVRLYGMQIVQALSWTFSTPVTAAGL
EELSAVVSLMHGIAKSSIASGVSPNSPVVAVANVFVEQSLHLLQHLVYALLHPNHLAALI
EGLTAEERGWLEKESSEADVEKRPVAAAVTLKMVELARDVVGALVDYSDAWGTLLKDSMD
WKVERAVVLPTATVTASDKASLGTLFDLCSYCIDTLRSTTSTAAPSLPSPSPFPTLSPPS
QASLRNVCSEMLEASLLLATTQLGLHARQGGQGTGFVRTLGELGSETAEIVDKALGLTVP
GTDAAKERNRKALLEVLKRRLTL