Protein Info for mRNA_7413 in Rhodosporidium toruloides IFO0880

Name: 15781
Annotation: K17550 PPP1R7, SDS22 protein phosphatase 1 regulatory subunit 7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 PF12799: LRR_4" amino acids 229 to 268 (40 residues), 31.4 bits, see alignment 3.8e-11 amino acids 325 to 364 (40 residues), 34.6 bits, see alignment 3.7e-12 amino acids 368 to 402 (35 residues), 38.6 bits, see alignment 2.1e-13 PF13855: LRR_8" amino acids 325 to 380 (56 residues), 33.6 bits, see alignment 5.5e-12

Best Hits

Predicted SEED Role

"internalin, putative" in subsystem Listeria surface proteins: Internalin-like proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>mRNA_7413 K17550 PPP1R7, SDS22 protein phosphatase 1 regulatory subunit 7 (Rhodosporidium toruloides IFO0880)
MSGPLQPTDFNLPAGLAPSTEPSTSSATQPSASEGAEHGDDGQSSESEGGNVSEGGTRER
FANLKTDERHFEDEKARLERNARLVMGPPLGEGQSGGPPQDQVIAGEELAQNEDILADFD
DDALDLELTHLRLRTLRGLGIERFRKVQRISLRQNLLTSLFYHPLPPPTASEGHTLAENG
AATNGDRDAVDEDPHDDQDAAKKEADFPYHEQRRAEEEEPVWPLRDLKELEELDLYDNSL
KSVKGLEGLDSLESLDLSFNLLRSVAPFDDASPNSPYAFPRLNHLYLIQNKLTKIEGVKD
RTNLTYLEYGGNRIRTIENLPISANLRSLFLGKNKITKIENLEGLTGLRTLSIQSNRLTK
IEGLDALTELEELYLSHNGLTKIEGLRKLTKLTTLDVGNNKIVEASAEELAPLTELEEFW
ANNNELHAIPSLPPSSHPNLSTIYLEGNPLQKELGTAYRRKIMLECPQVQQIDATFVRQV