Protein Info for mRNA_7439 in Rhodosporidium toruloides IFO0880

Name: 15807
Annotation: K20989 DUR3 urea-proton symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 54 to 75 (22 residues), see Phobius details amino acids 90 to 108 (19 residues), see Phobius details amino acids 131 to 154 (24 residues), see Phobius details amino acids 167 to 185 (19 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details amino acids 254 to 274 (21 residues), see Phobius details amino acids 294 to 315 (22 residues), see Phobius details amino acids 352 to 377 (26 residues), see Phobius details amino acids 397 to 421 (25 residues), see Phobius details amino acids 427 to 448 (22 residues), see Phobius details amino acids 456 to 478 (23 residues), see Phobius details amino acids 498 to 517 (20 residues), see Phobius details amino acids 587 to 613 (27 residues), see Phobius details amino acids 619 to 643 (25 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 48 to 464 (417 residues), 201.6 bits, see alignment E=1.2e-63 PF00474: SSF" amino acids 51 to 464 (414 residues), 65.7 bits, see alignment E=1.9e-22

Best Hits

KEGG orthology group: None (inferred from 48% identity to ppl:POSPLDRAFT_95441)

Predicted SEED Role

"Putative sodium:solute symporter, similarity with yeast urea transporter DUR3"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (666 amino acids)

>mRNA_7439 K20989 DUR3 urea-proton symporter (Rhodosporidium toruloides IFO0880)
MPGTAILSQGVGYGVVLGIGCFFTLLMIGLTKLQTRYTPMKMTSISEFASASHSVKPGLI
ACAIVSSWTWAATLLQSSAMGYKTGIYGPYSYAAGATVQIFLFAVNAAKIKMNAPKAHTF
LEVIRVRWGTFPHVVFIFFAFATAFLVSSMLITGGAATVTDLTGMNPYAAAILIPIPVAL
YTLVGGLRSSLLADYIHTVFLFGIILLFMFEVFVTNDKIGSPSKMYDMLVQAGKDWPVSG
NKDGSYLTFQSKSAGIFMVLNLIGNLTVFADQAYWQRAIASVPSTAVKGYMLGGSAWLSI
PLGMAATMGLSAVVLKYDPSYPNYPIGLTSAEVAAGLPAAAAAQTLLKAGGAAALLVLLF
LAVTSATAAELCATSTVMTYDIYAPYIRPGASEKELLLVDHVGIVVWCVVMAVAGCVFHA
IGVSLGWLYEFMGVIIGAAVVPVAMGIMWSKANRWACTIGAICGTSSGIIGWLVTAATLN
DGAITMETTFQDYPMLCGNLLSIGIASIIAFTGSLIWPENYDWVETRALHAHTEASEIVP
ESPVEGVDDDLKNEKGVASPDQGRSAAPSIEGVELDTPEHLRKTHRFATVVATCMFVILM
ILIPVPLAASGWISTKVGFTTYVVIAFIWVFYGAFAVCIYPIWEYRKSLSTIFGHIWADV
TGKGKK