Protein Info for mRNA_7450 in Rhodosporidium toruloides IFO0880

Name: 15818
Annotation: BLAST proteophosphoglycan protein, putative [Rhizoctonia so...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 82 to 108 (27 residues), see Phobius details amino acids 135 to 155 (21 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details amino acids 240 to 260 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>mRNA_7450 BLAST proteophosphoglycan protein, putative [Rhizoctonia so... (Rhodosporidium toruloides IFO0880)
MSAALSQSLPAGFSLVGGVPLKSPDLAASIVFIVVWALLTPLPVWRFAVRRTRVAVLVRP
AVVIVIRIATCIIRALEANGNYATGLFIAEQILLLIGVIPLCEPLISLLRFHVRRYWTPS
PSDGPKERKTMLNRLLTLLRLALIAAIVLGCVSGAQTNAAMTDPSRVDSLKHYRYAILGI
TLFISILSPVIAIVVSSQNGLPLGPAFFLIGCATCLIIPSVYKLIITLHPVSVVSHGAKA
GFYIFSCVPEVVLVVLYFAFDLERMFDINEGAWKDKVEKKMRKREWIGAYTTKEEHELRE
VPNQRLARGGSDLEEGKF