Protein Info for mRNA_7459 in Rhodosporidium toruloides IFO0880

Name: 15827
Annotation: K10997 TOF1, SWI1 replication fork protection complex subunit Tof1/Swi1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1214 transmembrane" amino acids 446 to 464 (19 residues), see Phobius details PF04821: TIMELESS" amino acids 87 to 356 (270 residues), 251.8 bits, see alignment E=7.8e-79 PF05029: TIMELESS_C" amino acids 697 to 852 (156 residues), 43.1 bits, see alignment E=3.5e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1214 amino acids)

>mRNA_7459 K10997 TOF1, SWI1 replication fork protection complex subunit Tof1/Swi1 (Rhodosporidium toruloides IFO0880)
MPKHKGNASDDSEPETYNPYSDDDAASAGRGAGPDEDLESGWSDGGAPMTAQQRKRAALH
PPISSICAALGGFEEFLDENGQVYTAYSLGDQVVGCLKDLKRFWRMDEKDDDRTVARIFH
EIGVLKTDLIPILKTTLGSGAKGDRIALACVELIGAMTWPINVAEELRDAQLLGELKQSR
DFTTLIDAQRGYKASIIKEGVLRHMMSILAGSLQKGRRDRTQKDENIISLILHVFRNLAY
LTDRATPASSASASAIEQSSLQSDLIASFSREGILDLLLAMSAHADSSDYAPWNMVVLDI
LHLLYRGVRADELMVPENEVENTRLRELLDLEQKQGGREFALKGSRHSRFGTTIAVQSNG
RKYILHKQSTLSEGPSATLDKIKRAKAKKVRIDDDLAPPATQLRPEAVRILYETSRKFVE
SAFNPFFASVLRDIRMERLKVRESDTLRFLYLSSFFLEFFLLLYRDDERRGISHLDEENG
HDFGLVAELTEPHAIGFVTMQMKNALEEKPPLWTDLHAGVECFTQILLVIEALQASGIPE
HIDVAEILQNKLYYEAETLEMVVTLITRYSSQSYKYLDSVMHLAYTLLRMLEKYSKSKAY
MYVRKKKAGRAAAKKKRQKNKSADENEGDGLGMGEEEDEEQEEVEQSAVTFGEHAFQFEK
FEQRFADESVLSTCMIYLESYKTFRTPEQMKRIVALMHRQAIKAKSEGLFYKPTVLELFR
RIMEDRDIADAREGPNVDLRKLIEYVLRKFFKAVQEHPFLLLECFFPKTRTQLGKMRMGE
VDPFADSDDDTLMYKAKKIGEVEVQPGFSHTQQIGIAVACLLEGGEQRLVDMVKKQLVLA
SAARTEIILTTDGPPNDDVAMLGDENETDAALREKAAQLKGPSAEAVALFTPHNVEYGED
TEVKEAATVNPHVKLLMRLLSWESSEAPESGELVWSIPASILPSKLDSDLKIIEDFVLDP
VDPQNGKSAAELLRKQRKKPVRRKRKIASEDEMELGSDGEPVVKVKRKRQKKRQEEEQAY
KSAQFINDSDDEDDPDRDAAFFAAEAALRAKLAAGQVPVHLENGSKKKKQPKGSAAATSS
VRARSPASSPPPAAPKKGKGKTGGRKKKAKKTKFDSEMVSDLEDDADLVDGLRKEANKQR
NGADEEEEPGGPTSPASSSTVASRKRATSASSATSSPPAAATATTGIAGDEDEEAVGATQ
YKKKRRVVLDSDDE