Protein Info for mRNA_7460 in Rhodosporidium toruloides IFO0880

Name: 15828
Annotation: K00698 CHS1 chitin synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1536 transmembrane" amino acids 299 to 318 (20 residues), see Phobius details amino acids 337 to 357 (21 residues), see Phobius details amino acids 587 to 614 (28 residues), see Phobius details amino acids 1116 to 1139 (24 residues), see Phobius details amino acids 1144 to 1164 (21 residues), see Phobius details amino acids 1171 to 1191 (21 residues), see Phobius details amino acids 1197 to 1221 (25 residues), see Phobius details PF03142: Chitin_synth_2" amino acids 743 to 1267 (525 residues), 925.3 bits, see alignment E=1.7e-282 PF13641: Glyco_tranf_2_3" amino acids 941 to 1110 (170 residues), 39.4 bits, see alignment E=9.7e-14 PF13632: Glyco_trans_2_3" amino acids 944 to 1178 (235 residues), 43.3 bits, see alignment E=6.3e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1536 amino acids)

>mRNA_7460 K00698 CHS1 chitin synthase (Rhodosporidium toruloides IFO0880)
MASDPPPPRPPRQAPPPAQALHHGAQRPQREQQPSYPSPGLHPNPQPNSQRPPFAQHSSS
SFSDESAKQPLSSPPVRPPNLAYASHASSSTSYAGGAIPKVQFSRDQGSTSFYDSASAAE
VPLVGYSSAYSAHPSAAHGAAATPGMTSLTVGGSGADFKRKKSLVRPDRERVDENHRLYN
YRQHAAMMEAEGRGTAAVSRTGHYAQAGLPVPVGPAEVSGAAAAAAHPSHGAGAGAGSTT
LRRGKSILAREEGMVNESGLNIFKRGQTLRRPKRGAAGGAMPGGAYDRGRRAKEAKKPLG
AWMIYCRILTACFPAPLLRCFGFRTKERQDAWREKIGLLSVIALCMAFVGFLTFGFTQAV
CGTPALRYRAGSIEGGSMIFHGYDYDMDSFRHPAAAGISEGSNPLYDIFAAAGKDGSFLF
QNVNQKCLNVITPAAGTGITHNGNEMGWYFPCNLYDQYGTSTVNLTGYAEGWQCHTQGDA
RVQFSQLKALGQVYFLWDDLKNTSRNLGVYDGAVLDFSLLNWLDKSQVAYPPIFDELRSG
TNSSFRGRDITSLMVNSNQRDVAECLVDVIRVGFVDSVTFGCVASDVVLYVSLVVIIGVV
LIRFAFAVLFGWFLSWRIGKFPEETNEQRRARANEIENWTDDIYRPAPARYRPSVPNKLQ
KKSMLPTTSRFSKGDLLKAAGNDSSLPSLSKKGMIGAGMRNSPPGSPGGPRASRSSTSLP
MSSFTLDGLARGSAADGAMGACPFPLADIVPQPPPDYEPFNYPLAHAILLVTAYSESVEG
LRTTLDSLSTTDYPNSHKVILVIADGMVKGSGNSLTTPEIVLGMMKEFVVPPAEVEPYSY
VAIADGHKRHNMAKVYAGFYSYDDNTVERSKQQRVPMLLVAKVGNPAEQRDPKPGNRGKR
DSQIVLMTFLQKVMFDERMTTFEYEFFNSLWRATGVSPDRYELVLMVDADTKVFPDSVSR
MVACMVHDPEIMGLCGETKIANKSDSWVTMIQVFEYFVSHHQTKAFESMFGGVTCLPGCF
SMYRIKAPKGGDGYWVPILANPDIVQHYSENVVDTLHKKNLLLLGEDRYLTTLMLRTFPR
RKMMFCPQAVCKTIVPDTFSVLLSQRRRWINSTVHNLFELILVPDLCGVFCFSMRFVIFM
ELAGTLVLPAAIAFTLYLIVVAIIPGTVKPVISLILLALILGIPAILIVITSRRWSFLGW
MLIYLCSLPVWNFVLPAYAFLHMDDFSWGQTRKIAGEKAGGAGHGDKEGEFDSSHISMKR
WADWERERRYKSANQSRDSSYGDGPRGNSPGRPASNRYSIMSSTDTSEGFSHPRYPTELS
LPAPLAPQAISPASSQASFDNPTSAISPPPPAHSGALSRSPVDYPTHQQAGYGDDDEADR
PILHHQSPPIMASAQFHAEPDNLPVSPSVSSTSPPPASSASFASNNPFANPPSTQSRRGV
SLSDVGPVPSSGGGGVRVVQRHSRRQSSNAPSSSVNGQHRSRPSTQQSTQPSFGAADSFY
SGTTSGGGSISGHSSSSGGHLPPGAAPPRFSRGGQP