Protein Info for mRNA_7465 in Rhodosporidium toruloides IFO0880

Name: 15833
Annotation: K08518 STXBP5, SRO7_77 syntaxin-binding protein 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1103 PF08596: Lgl_C" amino acids 641 to 1064 (424 residues), 98.7 bits, see alignment E=3.2e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1103 amino acids)

>mRNA_7465 K08518 STXBP5, SRO7_77 syntaxin-binding protein 5 (Rhodosporidium toruloides IFO0880)
MFSSKSRKAVEAVSLLDHTQQLRTPTAWALGQLATLGIGAELTAIAFDPVQSLLAVGTST
GRLFVFGAPGVQVEWDVGLPSKIRHLAWKSGSGFLCVVDAKDTLYVYDLQRIEKGRPHRD
SSLSLRSNVTCVETSVSHSFLFLGCRDGTVDVYDIDRGILAPHARIPNLWLVQEEILRRS
GVPDAPSRRHIPVCTDIKAHPLNLNLLLVAYEGGVALWNIATRQADRTWEFVLPPGAAGG
GNDTEETIFMERRPAVTCLAWRPDGLVFAAGHDDGSLSFAATADDNPIMIRTLERADVNK
ATEEDLFGWSSQGQPGQRQPANREPIFRLAWSGFPQETYLSQAFASVAGPSSPTVPSSPS
LTEQKADLHGGTLLTVMGGILPSDPVGIHVLEFPAYVAPIASTAKSGGIPLAVREALRDS
ISPVAHHLYPTPAPPEDFLLLPRSSPHYGGAYDPSAILITSGRDSRCPVPSAPHSSNSIE
AFTFPPTNSRAPRTLSLPPALSFSGRDTCASAKLATLGSLSYRHLLHQFDISEETAERIP
LKGGHATPLPRSNRRGPPPTSGDQPPRILITTHIDLTVRFSDVSTHVLWGRKPEDGSDPR
VEQDFPRPLRHLDIDVKAALADPRAAGLEAARLWKARPWELEIDKVELAEENLEVAISLS
TGDVLVHRFAYGEAPRELEQDRVDAEANLDDTVQDALRDMNLDGATNPVPPRPTFGSTGQ
QSRQGSFAPTSYSADMDPQDRYVNLADAVVPRPDLDGFRPIAAFAFASTSFASGIALKSC
LALSNVGFLAMSNDATLMVVDMRGPDVLFVDSAGSGRSAASDKGKSKAKVDNSPITALTW
TVCAIGEDHDRSPRLIVSQASGLSRIFELANVGGSWLVSERFASVHHDSTRNTFATFVLD
KRGNELVADSQNLQLALNQQATYTSPDNIDPVGALTSLWITVAPTTLACFYNVDGPKTAT
YEDEHGQFERAAIVRAQGCTALAVQSRNCMLHVFSLPDLRQVSRLRFEATLHDSAGIFHI
APDGDFVQLLDPLNVRLGTIRDFYRPAFPPKVVAYDSSIAIPAQVSALQSVGSALGAWFG
AQKVYTGAEIDGIRASFLSPRRR