Protein Info for mRNA_7466 in Rhodosporidium toruloides IFO0880

Name: 15834
Annotation: K17887 SNX25, MDM1 sorting nexin-25

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1371 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 280 to 297 (18 residues), see Phobius details PF02194: PXA" amino acids 125 to 308 (184 residues), 159.7 bits, see alignment E=1.6e-50 PF00615: RGS" amino acids 465 to 603 (139 residues), 29.4 bits, see alignment E=1.8e-10 PF00787: PX" amino acids 1018 to 1111 (94 residues), 69 bits, see alignment 6.8e-23 PF08628: Nexin_C" amino acids 1232 to 1338 (107 residues), 98.7 bits, see alignment 6.5e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1371 amino acids)

>mRNA_7466 K17887 SNX25, MDM1 sorting nexin-25 (Rhodosporidium toruloides IFO0880)
MPPQLSYRGAGALVVLAFLLGSKARGHNPLVSLGWLLLYAVAGVVAVLGGQLWLAKVLER
RSSSFGSQDGSGEGSLLSLRPGRRRGPPQLHFTSPAAWDMTQTKAKWEATAAANRLSFPG
APPFLSAAIDSLLHLILRDFVEKWYSAFSDSPVFPNAVDATIRESLLAISSRVGKVDWSD
VLVGRILPLLTTHFERFDIAEKAVHGRGARAGTPDSDEFDLFVASRYAQESKENRLHPAV
DVASPNSRPAEEAWLRSTFETILPLVLPESEGDSPAVRIMVREIVACAVVFPIIEMLSDP
DFANRLIDDKAGAAIRDQKMVNEFREALNKQEAALMAAPTRTLSSAASSLPKRRTEVVTV
RTGSRQFDAWLKSIGRCASLQEARRLKSDVSGQIRRAKILTHGKELDDVVDGVKVAEWID
FIERLYTAKRKIDKRIDKLGGNQGLARAPSILGNLSSQLDSPVKLSDMLVDPTAVTYVME
FLERRRHADRAQFWLIVEGLKDPLDGIESDESLATDSTFDAVAAISAFEDIRMIWSAYLV
GNPFRSSEGHLRAVQAFVEQEDPRNATPQMLRQVRHALFAIQKEVLSLLEEEDAPAFSRS
DLYFKALSALPTAAESVITPPTTTAPLPLVTPPTPAGRTGLSRARSRSNPQLQSTSAPSP
ITMSSPPAATARPPSPGFLVSPTAARKDTAPPQVTFHAAFDRARSQDLFEATTSSFEPMR
KVSSGSLETIASASTYPSAQRKSNAMTDSLDFLISPQTVETERSPLFGSESTPDDTVTPP
SDDEFVQVQTIEAIQEALNSILASDARTQPQANQSTTSLPSLKDTSLPPPPRRTSTNASL
RSSGPATPALSSSANLPSRLTTTPRSSSHNSSTAPRYAATGTVFDDTEVTDDDDGSEADL
VEEPASDEFSVGLPAAGDLSLATEIPRLADSLEKLRKQEIVVDALIRKAELTGVASELKV
LVKSRESLRREIRAATFQKEQLESQAAQNELSPTRTRITIPGTTVGQASAAASGATFQLY
LIEVHTLTEEGAFQSGWITTRRYSEFLSLYNKLKEKFPSTRNLDFPSKRLVGAWSKEFIE
QRRVGLERYLQNVIKLPAVCVSDELRSFLSKETVALPKSDGPRRVVPPLLPGQGLVRSLY
RGLTTGIDDVLGTSTSSMVEQMVNRLSQQAADFAGIAAGSVLDEDLVGQVLADSVSSLAD
AGRPGEEGLTYFTAPICDLFVTIFELKEKNNWLRRQAILIVLQQVLGGTIERKFRDSVKL
LLAPPQLASYVAALQNGMWPNGELKPKEPARTAAEKAATKASASRKLADLLPDVAASLIG
RHNAKQGARRLFATLQNKRLNKHLIYSIADEIFAVVFPEIKEPRARPLFLA