Protein Info for mRNA_7470 in Rhodosporidium toruloides IFO0880

Name: 15838
Annotation: K12815 DHX38, PRP16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1303 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF00270: DEAD" amino acids 624 to 772 (149 residues), 30 bits, see alignment E=1.1e-10 PF00271: Helicase_C" amino acids 816 to 942 (127 residues), 49.6 bits, see alignment E=1.2e-16 PF04408: HA2" amino acids 1006 to 1092 (87 residues), 81.3 bits, see alignment 1.5e-26 PF07717: OB_NTP_bind" amino acids 1150 to 1228 (79 residues), 50.1 bits, see alignment 7.5e-17

Best Hits

Predicted SEED Role

"RNA helicase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1303 amino acids)

>mRNA_7470 K12815 DHX38, PRP16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 (Rhodosporidium toruloides IFO0880)
MASPEPNPNMDPMQHLAILLSRSLNTLNPNPVLAKTVYNLSHSHSTVDSFHKAISAFGRF
SLPQATEIYEYCQAQETIERAFSQPGSSLNGGRGIQIMDHDVLEPDQPVRAGLSMGAGED
KHVFKVPQRSALGLDRLAAEKRREKADLEKRGDIKRFKYDDEEEEDQSSAGFKVPTRRSA
PSNLRNRPSDTPSHPGGLSDTARRRLEEHRAKRAAAAADTRELKGRDEGGRSAMEGFRER
LNRNEERKRDRDARGGREPERDGRERDQGYGGRTSQRAGGYEPETPGGSSTSAARLRNQS
WDSTPSRGGPRDPSATPRSRASWDSTPRSSSGRRDEREWDTPRSVRVAGGDESPYPLREP
PSALGDIDGDAGGWEQDVREVDRSWYNIDEAGNEVAQDFEGYDDFADREAELIQKAGGGP
GAQPKKRLTARQAARNAENDQWERNQLALSGATGERRQLDFDSLDDDEESRVHLLVHDLK
PPFLDGKTAFTKQLEPINPIKDPTSDLAVFSKKGSLLVRERRAQRERERAAAKAASLAGT
ALGNIMGVKEEENADGESTGEKKTSTSDVKHEEDEGRKGSDSQFAEHMKKATKGKGTSQF
ARTKSLKEQRQYLPAFASREDLLKVVRENQVVVVIGETGSGKTTQLTQFLHEEGYSQYGL
IGCTQPRRVAAMSVAQRVSEEMECELGAEVGYSIRFEDCTSEKTVIKYMTDGVMLRESLN
EGDLDRYSVIILDEAHERSLNTDILMGLLRKILSRRRDLKLIVTSATMNAAKFSKFYDDA
PCFTIPGRTFPVDVLFSKTPCEDYVDSAVKQALQIHISHPPGDVLIFMTGQEDIEVTCDV
IKERLLQVDDVAPLEVLPIYSQMPADLQAKIFSATEDGRRKCIVATNIAETSLTVDGIMY
VVDAGFSKLKVYNPRMGMDSLQITPISQANANQRSGRAGRTGAGTAYRLFTEMAFRDEMF
ESTIPEIQRTNLSNTVLLLKSLGVKNLLEFDFMDPPPQENILNSMYQLWVLGALDNTGEL
TDLGRKMSHFPMDPALAKMLISSVEMRCSAEVITIVSMLSVPSVFYRPKERAEESDAARE
KFFVPESDHLTLLHVYTQWKSNGYSDAWAARHFLHPKTLRKAREVRTQLLDIMKHQKLDI
IPCGTDWDVIRKTICGAYFHQAARVKGIGEFQHLRTGVPMHLHATSSLYGLGFLPDYVVY
HELVLTSKEYMSTVTSVDAYWLAELGSKFYSVREQHFSDRQRLAAKQQFKTESDAEMRLK
EEFERAKQEKAERQRAAKSVASTPRIAGVGTPVVKRTPRRFGM