Protein Info for mRNA_7472 in Rhodosporidium toruloides IFO0880

Name: 15840
Annotation: K03680 EIF2B4 translation initiation factor eIF-2B subunit delta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 358 to 382 (25 residues), see Phobius details PF01008: IF-2B" amino acids 190 to 429 (240 residues), 223.1 bits, see alignment E=2.2e-70

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (445 amino acids)

>mRNA_7472 K03680 EIF2B4 translation initiation factor eIF-2B subunit delta (Rhodosporidium toruloides IFO0880)
MSSPRPASLLSQGRPATPSSAPAQGAQGSGQAAGGAVKANKGKSAKDQAKAEKAARRAAA
KAAQGGQAGAGQAGEGGERGAQGGEKQQGKGKGAQGGQGSGKGGAKEGQGGGGPAAASGA
GAGGQGGAQGGRGGDSASQAGGPSHADTLQPFLHLDLPLPSSSLSHSSKLNTANIHPSIL
RLALEYSEFKIVGANARCIAMLEAFKDIINSYTPPPQTSLTRHLPTTHLNPQIAHLIRAR
PLSVSMGTAIRFLKYEISLIEMEMPLEEAKSLLISKIDSFIRDRILLASRVIEQHAIEKI
NDGDVILTYARSSVVEGVLLEAKRQGKEFSVVVVDSRPLYEGKHLLHSLRLASIPTTYVL
LPSLSLVLPRISLCLLGTHALLSNGSMFSRAGTAMVAMMLKEKGVPVVCCCETYKFSERI
MLDSIVGNERGAWRTSFSCWRHCFV