Protein Info for mRNA_7475 in Rhodosporidium toruloides IFO0880

Name: 15843
Annotation: K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 transmembrane" amino acids 140 to 160 (21 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 208 to 227 (20 residues), see Phobius details amino acids 234 to 254 (21 residues), see Phobius details amino acids 266 to 291 (26 residues), see Phobius details amino acids 303 to 326 (24 residues), see Phobius details amino acids 371 to 395 (25 residues), see Phobius details amino acids 415 to 434 (20 residues), see Phobius details amino acids 455 to 476 (22 residues), see Phobius details amino acids 482 to 500 (19 residues), see Phobius details amino acids 512 to 536 (25 residues), see Phobius details amino acids 543 to 567 (25 residues), see Phobius details PF07690: MFS_1" amino acids 147 to 534 (388 residues), 114.8 bits, see alignment E=2.3e-37 TIGR00880: multidrug resistance protein" amino acids 183 to 321 (139 residues), 134.1 bits, see alignment E=1.9e-43

Best Hits

KEGG orthology group: None (inferred from 42% identity to aor:AOR_1_350134)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (583 amino acids)

>mRNA_7475 K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein (Rhodosporidium toruloides IFO0880)
MAPDLVRDSTFGQLVNWASGGRLFPYADQRPGYVVPKRYLQPSASSTPASPIPRTTTDDS
TYSSATLPPTPSGAVTLVNEPGVCRAQKDDEGRADLDLEKQAAPVEPSKEPEPAAPYPFL
VDWEENDPDRPLNWSLRKRVFVALIISLYTFGIYIGSAIYTSSIPGLMQEFGINQVGATS
GLTLFVAAYGFGPMFLSPLQELPRFGRNPVYILGLALFVIFQIPEVLAKNIATVLVFRFL
SGFVGSPALATGGASMADIFPMKDLAVAIGAWANGAVCGPIFGPVVGGFAAQNMNWRWPF
LELLWVSAFAFLVMFFLFPETLESTILVRRAERLRKLTGNMLLKAPAELLESEKEHLGLV
LKKRITIAFRLAAEPALAVAHSYIALVYAVFYLWFEAFPLTFNEIHHFSLGVGGLPYLAF
VVAAVITYAFYVVYQRKHMGPRMQKNPNLAPESRLELGLFAAPFIPISLFVFGWTARESV
HWIWPIIGAALYLPGIYLAFQSIMMYVSMSYPAYAASILAGNTLFRSVFASVFPLFGEKY
FKALGIGAGSSLLAGVSILMIPLLYAIMKYGDRLRARSSFAQG