Protein Info for mRNA_7480 in Rhodosporidium toruloides IFO0880
Name: 15848
Annotation: K01868 TARS, thrS threonyl-tRNA synthetase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 64% identical to SYTC_SCHPO: Threonine--tRNA ligase, cytoplasmic (ths1) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)
KEGG orthology group: K01868, threonyl-tRNA synthetase [EC: 6.1.1.3] (inferred from 68% identity to cci:CC1G_12107)Predicted SEED Role
"Threonyl-tRNA synthetase (EC 6.1.1.3)" (EC 6.1.1.3)
MetaCyc Pathways
- tRNA charging (21/21 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 6.1.1.3
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (781 amino acids)
>mRNA_7480 K01868 TARS, thrS threonyl-tRNA synthetase (Rhodosporidium toruloides IFO0880) MLTRTLYPRLLSPVLARPARARISRLSPLPSPAHFSTTCATMSAPHPVHSTAQPSHPENA VPASGAPTAQPGQEAPKKAPKQKKGDIVGGMAALELNPPPEYLASRVELFDQLKKEYEEK VASMPREAITITLPDGSTREGKSWETTPMSVALSISKGLADKTVIAKVDGNLWDLERPFE KSASLELLDFEHPEGKKVWWHSSAHILGECCERHYGCHLAMGPPTDDGFFYEMGMNGDRV VQQSDYDKLETLAKGVVKDKQKFERLVVSKENLLKMFSYNPFKLHFIKEKVPDGGETTVY RCGPMIDLCVGPHIPHTGRVKSLAVLKNSSSYFLGDKNNESLQRIYGISFPDTNQMKEYK KFLEEAAKRDHRKIGKDQELFFFHEMSPGSCFWLPHGTRIYNTLVEFMRSEYRKRNYQEV ITPNMFNSKLWETSGHWQNYADDMFKLDVEKEQFALKPMNCPSHCLVFGSRDRSYRELPI RMADFGVLHRNEASGALTGLTRVRRFQQDDAHHFCMPEQIEEEMDVCFQFLNEVYGTFGF KFELKLSTRPEKFLGKIETWDEAERMLSSALDKFVPGQWVIDEGDGAFYGPKIDITIQDA LRRKHQCATIQLDFQLPQRFELSYRSAEGGEGGAGEKLVRPVMIHRAILGSVERFTAILT EHFAGKWPFWLSPRQVVVIPVAGPHKEYAKEVAQKLWDAGIYADADLSDSTLPKKVRNGE IAQYNFIFVVGSEEMDQRSVNVRNRDDAGNKKARSETIKLDEVMDKLMRLKNERRLDNEL R