Protein Info for mRNA_7492 in Rhodosporidium toruloides IFO0880

Name: 15860
Annotation: KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2091 transmembrane" amino acids 306 to 324 (19 residues), see Phobius details amino acids 344 to 367 (24 residues), see Phobius details amino acids 577 to 596 (20 residues), see Phobius details amino acids 608 to 624 (17 residues), see Phobius details amino acids 636 to 659 (24 residues), see Phobius details amino acids 765 to 792 (28 residues), see Phobius details amino acids 845 to 863 (19 residues), see Phobius details amino acids 875 to 894 (20 residues), see Phobius details amino acids 908 to 925 (18 residues), see Phobius details amino acids 931 to 950 (20 residues), see Phobius details amino acids 965 to 989 (25 residues), see Phobius details amino acids 1004 to 1019 (16 residues), see Phobius details amino acids 1039 to 1066 (28 residues), see Phobius details amino acids 1273 to 1298 (26 residues), see Phobius details amino acids 1310 to 1334 (25 residues), see Phobius details amino acids 1352 to 1372 (21 residues), see Phobius details amino acids 1399 to 1428 (30 residues), see Phobius details amino acids 1486 to 1499 (14 residues), see Phobius details amino acids 1524 to 1551 (28 residues), see Phobius details amino acids 1604 to 1624 (21 residues), see Phobius details amino acids 1631 to 1653 (23 residues), see Phobius details amino acids 1666 to 1685 (20 residues), see Phobius details amino acids 1720 to 1744 (25 residues), see Phobius details amino acids 1764 to 1785 (22 residues), see Phobius details amino acids 1813 to 1844 (32 residues), see Phobius details PF00520: Ion_trans" amino acids 566 to 802 (237 residues), 130.9 bits, see alignment E=2.4e-42 amino acids 845 to 1077 (233 residues), 94 bits, see alignment E=4.4e-31 amino acids 1275 to 1551 (277 residues), 96.1 bits, see alignment E=1.1e-31 amino acids 1604 to 1842 (239 residues), 81.3 bits, see alignment E=3.4e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2091 amino acids)

>mRNA_7492 KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits (Rhodosporidium toruloides IFO0880)
MADGSVVRRLPSPPSRPAPAADDPFQASTEAGPSTGFFDGGYSVAGHAHGRSESQAYSLA
SETDYDPSFRHPLTHDIDEEELEARSPLQPSVSTPPTRTDNRLGPFSSSSGPSRRPYLSP
LSTSPGLARTPSPRRPSLSGEGGWHELSASRSNGDSQGPGSSPGLMRRGTLAAAAERLRR
ASVRVVNLTGIDGEMLAEAEVEAEEAERAREEGRSPVDLTGRRRSSVGIGVTGVEDDGRS
GESADRRDADAMKDSADPGGEWEKEVQRSEKAFRMLRGKTLGVFDPDNMFRQACARVLTA
RWTEPAILLLIILQVVVQTIQSSYNVYEYPRPTKGFFHSWEDYVLFVVFCAFTVEIVARI
VVTGLVINPPRPPTPPEVKPDIYGTPHRSPSLVTKIQSRLSPMPSPTPSRRRSPLPSPSR
LSPLPSPSRLSPLPPLPTKATYPPAALTSADITSLDYARFPALNTSAVALMREDAPAPPT
IDPGPTGVGLGFTSAPSASLSDPFSIKSGLAAAFPAATAAAAANSHSVASSTTSHDPYGA
YHQPSIFASAHTPYALSIERQRQTYQQAFLRHSWNRIDALAVLCFWISFGLASNGLEASK
NLWFFRSLSVLRAARLLAISPGTQIILQSLKKASPLLVNVGLFVAFALLLFSIIGVQAFR
GSYLRHCIWIDPQGVFANVTADQPCGGYIDAAGVTRTYFTLEGLPSGEPPKGFICGPPSI
CAETENPVNGRWSFDNILAALMQVTVTASSNTWTDGMYAMMSADYFASFLFYVAGVLVIN
YWMLNLFVAVITSTFGDIRDETKHSAFAATSALPVKVRFDDERKPRRGLSKSADLIAKVY
RKTRFFWIALVVVSISLQASRSYKMDQAKSDAYDWVELGLTIAFDVEIAVRMFASLPDWR
RFFDSPANRVDLFLAVTTSIIQLPGVFGTRAYVWLTCLQIARFYRVILAIPRMKRLLVRL
VRTVYPLMNMILFLFLLTYLASLVAVEFFRGIPDPENDDTGNLTFYQFFNSFLAMYQILS
SENWTDILKTVLANEKGALQIVLAGVFLCGWMFVGFFVIGNLFIAVLNEGFQLAEEEKRL
RQLEAFAVGQKRAVTAGWFRRFDPYTYATMRQRRRTERQQASLSEDVLDRRMTTSPEPLE
SPPEDEKDLSPPTTAASSVRFVDQAKKAFKFRSGLDTLTKIVQPPPSPLEPPSRSIHHVR
EATIEERERLQEQTQRQRKDTVAEFIEEHPSYDRSLFLFSQNSRIRRLCQSVVDPAYGDE
RINGHPPKKGRRLAFQAVIFAAIAASIAIAGIATPLYRRDYFLQQGQVRIAWYSLVEVAL
GVVFLAEFLVRIIADGFIYSPNAYMLSLWRNIDGFVLLTVIVNVSTSLIEGPANNRFTRA
LKAFRALRLINLWPRMREAFYNVLILGIGRIIDASILAVLYIIPFAVWAQNIFSGLLYSC
NDSSVTTKAECVGEYLASPTSDWTFLAPRVWSNPYVWSFDSFRSSLLILFEIISLEGWID
VMESVMQIKGPDLQPQDNASQFNALFFVIYNAIGASFILTVFVSVIIAAFVRRSGNSLLT
TEQRQWQDLRQLMSRQRPAKRPKRRPDNAFRAWCYDRAVHKNGWWSRGVTVLYLVNIVVL
MSQARTTDEAIIAYNFVFLGFTVAYLVDVCVRAGGLGRHFWKNGWNIYDVVVISGTVATT
IPVLLGTGEAAYQLQKVFLVSLTVKLIQRSDSLNRLFKTAVASLPAIVSIFALWLVFFLV
YVIFYNEIFGLTRWETKETHNANYYTFWSALVLLILQSTGEGWNAFMHDYTVDWPRCTYS
PSYLLTDCGSPGWAYVLFITWNVLSMYLFVNLILAAVVDGFSFIWQDYGKVARITREDMR
SFKKVWAEFDPERTGFIQPAVIPRFLHRLHGVFEIKIYRDAWSVPSLQAAAYRDPLDQHS
SPAFHHYLGDRDALSLRRVDLDKLRQLVDGIDTGEVAARRRNYVRLYHEAMHDAEESLKG
ISLNKMLILLAHYRLVEDESALQLDELAKRRRKQELVADWVDLDRVNSFLRMVVLRRRFL
AHLEAKRQNRFSNLPAINVTDEGHDEPERDDGRTPPSIETSRGRPSVSFAD