Protein Info for mRNA_7507 in Rhodosporidium toruloides IFO0880

Name: 15875
Annotation: K17987 NBR1 next to BRCA1 gene 1 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 888 PF00569: ZZ" amino acids 267 to 303 (37 residues), 31.1 bits, see alignment (E = 2.4e-11) amino acids 345 to 379 (35 residues), 34.4 bits, see alignment (E = 2.3e-12) amino acids 412 to 445 (34 residues), 33 bits, see alignment (E = 6.6e-12) PF16158: N_BRCA1_IG" amino acids 649 to 752 (104 residues), 82.8 bits, see alignment E=3.9e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (888 amino acids)

>mRNA_7507 K17987 NBR1 next to BRCA1 gene 1 protein (Rhodosporidium toruloides IFO0880)
MPDRSYVFKLLYDGGPTHTSRRYGYSGEIALLQVYNGLYDRASQSFGLRKEDVNLYVRDR
VGNLSVALDTFSAFVKHVCEPLDTHADDFMIDEKKRIVLVFNVVSAQQLEAKRLAEKKAA
AREAKHKAKALAKASKSSQKKAAAEKEVQAKAELVEEKSGYAPAYKVAEPVAAASSEATA
DTVESPESTMADKTQSWAGVKTLLDKFVHDLNAHLADTFGDQATPFELRSPSADGEEPEK
DAEVEPEVQPVTEQPAQPAAQDQRPVHTHVFCDRCMRTVIGSRFKCTSCSNYDLCTDCID
SRFAFHPSLHAFAEIARPGDAAVESPRGAAARPEASIVEEKKPAKHPANCDSCQFPIVGV
RFKCLDCPDYDLDADCYDNAVEIHPQHSFVRINDPSDCKIVRSKESFVRHYNIVCDGCQR
NPVVGIRYKCMHPSCPDYDLCSVCEALPNPVHPRDHPLLKIRSPLPRTSSSTQLLADAKK
RVQERFGDGEQLAQAAAAATLSSGPVAALLKSLGVQLPQASSSSDTASASSTAPSLSNAT
LVDGPGGDKTLVVDVDVSTLPIEQQRHLPTEIRLPVKLADELPKDSKSQGPYEVEHLVLA
AEQEVEEAEQIPDDVEEHEEEDSSAEEEPQVEKKAEEAVPRAIFVSDITLLDGSVVPAGS
EFHKVWAVRAGSNGWPAGCHLVHVGGFSGKYFSGNGDKPSSFEIPAAQPGEIVELQVECK
APEENGRFMDFWRVALPDGTPFSDRLWIDITVESEGDVVKDGTATGSSLTSSFVAPSLNA
HGKAASFPPSEAAVTTPSVTAPPSSSGFSVPSHLAPSSRSGLDDGSDFESVRPTRTISRG
GSEAVYVSDDDESSEEDSSDETETDSSDSDDSEDDSEDDFVMLSGDEA