Protein Info for mRNA_7510 in Rhodosporidium toruloides IFO0880

Name: 15878
Annotation: K11644 SIN3A paired amphipathic helix protein Sin3a

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1481 PF02671: PAH" amino acids 32 to 76 (45 residues), 58.5 bits, see alignment (E = 8.7e-20) amino acids 263 to 307 (45 residues), 67.3 bits, see alignment (E = 1.5e-22) amino acids 504 to 545 (42 residues), 22.6 bits, see alignment (E = 1.5e-08) PF08295: Sin3_corepress" amino acids 605 to 699 (95 residues), 128.6 bits, see alignment 1.2e-41 PF16879: Sin3a_C" amino acids 1086 to 1375 (290 residues), 219.3 bits, see alignment E=1.5e-68

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1481 amino acids)

>mRNA_7510 K11644 SIN3A paired amphipathic helix protein Sin3a (Rhodosporidium toruloides IFO0880)
MAAAMEAKTNLNVRDALSYLDRVKMTFADQTEVYDRFLTIMKEFKSQGIDTPGVIDRVST
LFRGHPALIQGFNTFLPPGYRIECTVTSDGAAGGPGGSAGGGGAAGGQGGTTITVTTPMG
MTTRTQLTGEQADRVTSTTTAAAAPGEVKQEQGQGPPAAAPAAGQPMHIQNLPPAPGVAA
MQAAQTGGPGTPIATTPGAATVLSNQMGSTSSAPGAAPPAVPAAPASVASSSDAQGAARP
PMEFNHAINYVNKIKNRFIREPETYKAFLEILQTYQKEGKAIQEVYAQVTILFHSAPDLL
EEFKQFLPDTSPEGQAAAAAASPAQGLAGRAGPGTGKRAAPSAGKDGAGAKRAKTGAGAA
GAKETGVGKGKGKRKAVATDVSPLVGGPAGRAKGAASPADMHGLTYRSESPSVAGDYAHP
HLAHHAQAQAAAAAYYYGGVPPPPAAATAVSSAPGQQPGSVAYAYEPPAPPPPPQPLLAP
KPVPSQPDLAFFSRVKAHAKDQPTYHEFLKLVNLYTQDLIDLTALVARAWLFLHQDEALW
RDFKEMVGWIGDGHPDPVVDGVLGDPGRRVELDKQTGKRVIENVPRLDGERWRKAAGDAG
KGWETYGPSYRRLPAEEISLNCSGRDALCWEVLNDEWVSQPSWQSDEGFVAKRQNPYEEA
FHRSEEERHEYDYYIEANMRTIALLEPIASRIALMEPDERATFRLKPGLGNQSKSIYQRV
LKKVYGKEQGLEVIQALHENPCVAVPIVLARLKQKDEEWKRALREWNRVWREADAKNFLK
ALDHQAVAIKANDRRYLNTKALVSEIESLKREQQQREYGTPTHPLPSRHQLSYPVSDRQA
LFDAVKLILSFLDRTYVVSFADKPKVDAFLHEFFAMVFAIPPAEFAIEANALVEEDDTAS
NADAASDAGTVGGAASGLEEAVEAALSGTSTPTSGRGKGKKGGDLRKKALRKTVVPGDGV
PGPGRGRKRTAAVPVPTTNSAPSSRATSPVASTSAAGASGFGADGDSVMADAGTGLEEGA
ATSAGEGDAGSNGTTSREGTPAALVAEASATPAEPAAVEIDGLPEVIHPVDAKPAQTDKR
RSWNVFANSTLYCMLRLFQVLQQRLSQLRNSAAVLAVPPPIQPITPSHVPSLSMSLTYAP
PSGSGWTETSDYYYYRALALCDKLFDGDLDQQTFEDGVRRIMATQGYVLFTVDKILASIL
KLSLTAVTDAKTKEILALLREDRSHPDRSTHSQQIEYRSNAESTLANDENLYRVEWTPLS
TGSASDPLLLGTLRFQLMGRDVAAPEDLPAAERAWAKYVEGYVKLERTPGLVIEPRIPYL
PRNLRQLGIPPPPPSQAADVRPTLPKGLTVVSALQSRICLRSYKMFFCAETEDVLFRRVR
DADWPSEEVKAKKAKRVVQWLEKRTKEVEATKAADAPDGKADEGKDAAAAEKADASSAAP
EAGAKDAAPVEEKMDVEAESAAKKEEVGEEEKKADDVEMKV