Protein Info for mRNA_7533 in Rhodosporidium toruloides IFO0880

Name: 15901
Annotation: K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 922 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF02735: Ku" amino acids 431 to 587 (157 residues), 71 bits, see alignment E=1.2e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (922 amino acids)

>mRNA_7533 K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2 (Rhodosporidium toruloides IFO0880)
MALASRTASLFLIDCSASMNRVRDFEVGYGEHKTVRRRSGIDVAKEYVKAKIVQRIMRDL
KTTPFGVILFGHPKTKNILTTRAKEQAAERDEKFDRSSDPYRHCYELLPLTATIDRTLLD
RVDEAVAGEGPDGDAFTSVILGIETLDAQPSFAKYATKEIFVLTDGESQIDWDGISSAAK
QMNAKGISLTVIGMDFDDEEIAFVEANKSDVKRENESQFQQLVERLEATSAVVNARQALQ
VIATPQVKAVNSRADRMRLSFGSLETHPDTALVMWVDVKKAIVPAAPPSMKKMSMRGFEK
ARTQAAQQSQSQSQRGIKRGAGDAEEDEDDLDEIKRKARFADKQTREHQAQLNAGQGIEL
GKIGVLFDRELQNEGLAVGDEEDADLASHAVEMDRRFFYRPIEQANNSSQVRVQKKARQG
GETDEEDDDDARQEEEEGWQEADASALVEAYHYGGSLIPVGDLEDDIGTLSGLETGMEIL
RFLKQSDIRYEQRMGDAFYVYATPGELGSERTFSALCNGMDEKGCAALVRFVKKGFNRNG
KFRVPDPMLGILFPRIDDQDREYCYWVRFPYSEDIRSLPFPSLERIFNKKHVRRLEHKLL
PTEEMDEAMEEFVEAMDISQAGEPDEEGNPTDFFTTEDSFSPAIHNVQNTLVFRLSNPDA
DLPPVPPILTKYMDPPSAIAAKAAPVADKVKRVFDIQIVPPKPTKINKRTVNYAQPGDDD
RIDLDVVFGNSQAAAKVKKTEAPAAPLVKPESVDGKKGDDEDEDIVIVDAADARDTTDDA
RDTTAEQDEEEEEEPATEDEEPATEDEDEDAPASAATAKKPTPSTQAIEAAVAQARRFVE
NSFSWGGYQEASKKLKEAREMAQQLHAEATYNTGLRSLVSAVQKQPKKRDYLSRIKQDGI
GLLVGGGTSAAEAKQFEAELEA