Protein Info for mRNA_7542 in Rhodosporidium toruloides IFO0880

Name: 15910
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 28 to 49 (22 residues), see Phobius details amino acids 61 to 84 (24 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 338 to 359 (22 residues), see Phobius details PF07690: MFS_1" amino acids 10 to 273 (264 residues), 96.4 bits, see alignment E=1.7e-31 PF00083: Sugar_tr" amino acids 15 to 113 (99 residues), 27.3 bits, see alignment E=1.7e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (376 amino acids)

>mRNA_7542 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MVLEPAHLGLTAFLGASAAAPNYGALLVLRFFSGFFGAVPMTNSGALTGDIWHAKERGTA
MSFYSVATFAGPALGPIIGSFAAYRLSWHWAFIIPCLFSAVLCIAVLFFLPEIYPPVLIS
RLARQLRKETGDERIRSALELAEMKSRGTPRVQRFRAEAWRLLGTPIVMISTEPIVAAVA
AFASCCYALIYLLFEGYPVIFSEVHHLGPGYSSLPFLSILVGAIISVPVTLWYQKLYLRD
VKREGRHTPEQRLPPALAGGPMIVVSFLWLGWGGIVPTLSGVLQGVGSVLIFRSMQTYLI
DAYERNAASALASNVVARSIAGALFPLFAPALFHRLGVQWGCTLLAGCMFLLVPVPFLFE
RYGERLRRRSRFAPGR