Protein Info for mRNA_7544 in Rhodosporidium toruloides IFO0880

Name: 15912
Annotation: K07552 bcr MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 transmembrane" amino acids 74 to 97 (24 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 163 to 185 (23 residues), see Phobius details amino acids 198 to 220 (23 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details amino acids 310 to 330 (21 residues), see Phobius details amino acids 350 to 369 (20 residues), see Phobius details amino acids 389 to 409 (21 residues), see Phobius details amino acids 415 to 436 (22 residues), see Phobius details amino acids 454 to 475 (22 residues), see Phobius details amino acids 481 to 502 (22 residues), see Phobius details PF07690: MFS_1" amino acids 80 to 421 (342 residues), 127.8 bits, see alignment E=7.4e-41 PF06609: TRI12" amino acids 83 to 254 (172 residues), 28.1 bits, see alignment E=1.1e-10 PF00083: Sugar_tr" amino acids 108 to 249 (142 residues), 41.6 bits, see alignment E=1.2e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (519 amino acids)

>mRNA_7544 K07552 bcr MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein (Rhodosporidium toruloides IFO0880)
MATTADDVEKGTVDELADEPEQASRADDDNSLPAVPAGLALSRIPDSQYLLLAFSPTPAH
PDDPLCRSRRWKVWLTLLAALLVMLSALTSSCSSGAAPWIQADLGGNTTLPLSLFLLGYV
AGPWCWSPLSEAYGRRPFFVLGSLGLTAFLGASAAAPSYGALLVLRFFSGFFGAVPMTNS
GALTGDIWHAKERGTAMSFYSVATFAGPALGPIIGSFAAYRLSWHWAFIIPCLFSAALCI
AVLFFLPETYPPVLISRLACQLRKETGDERIRSALELAEMKSRGTPRVQRFRAEAWRLLG
TPIVMISTEPIVAAVAAFASCCYALIYLLFEGYPVIFSEVHHLGPGYSSLPFLSILVGAI
ISVPVTLWYQKLYLRDVKREGRHTPEQRLPPALAGGPMIVVSFLWLGWGGYKPHVHWIVP
TLSGVLQGVGSVLIFRSMQTYLIDAYERNAASALASNVVTRSIAGALFPLFAPALFHHLG
VQWGCTLLAGCMFLLVPVPFLFERYGERLRRRSRFAPGR