Protein Info for mRNA_7554 in Rhodosporidium toruloides IFO0880

Name: 15922
Annotation: K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 976 PF00069: Pkinase" amino acids 502 to 738 (237 residues), 154.1 bits, see alignment E=7.2e-49 PF07714: Pkinase_Tyr" amino acids 503 to 732 (230 residues), 90.8 bits, see alignment E=1.4e-29

Best Hits

Predicted SEED Role

"Serine/threonine protein kinase PrkC, regulator of stationary phase" in subsystem Conserved gene cluster associated with Met-tRNA formyltransferase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (976 amino acids)

>mRNA_7554 K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase (Rhodosporidium toruloides IFO0880)
MSDSPSIPPVTIPYPALVAGDASLPELIKKGFDSSPESLGLIIISDLPPSFPHLRRRLLL
LSNAFASLPEETREVYAHPQSNYSYGWSHGKEIHNGKPDRLKGSFYNNPSQDITPGLNEG
DEAVRNIWPKEKGVEEFEVAFKELCALMVKIGELVGAACDQFVGKTASKKISERERLYLD
SLTATWLRPSHTPAECAGMAPISKLISTLLCGIGSDSNDGRPPSPPPPVLTSDQQHKAAT
PPHELPALNFAAPLTAPELPKSHPPSVQASDDAGSTPLPPATSPDALSPPIAPVPKLRQL
VVSEPPSISHFVIPPTPIDPLAASPPPFDRPATPSDSRSPAASTSSTPRLHPSSPNLTVT
DPRSRSPHRPPRGHHRRSSSTGSRSFRETLNAFAVEGPDGVRSVNHYVLGEVLGRGSYAT
VEKAIDRETGHAYAIKEFSKRRLRQIAAAEALRRERQADRMNGRGRGRGRGRGRGRGGFT
SASRILQAAADDPDTAGPDNLDLVKTEVAIMKKVDHPNLASVHEVIDVTSDDALLIMELC
EGGPILKLKDGEEVKPYTEEEARLIFRQLVLGIAYLHHNEIIHRDIKPDNALFSDLARTH
VKLVDFGVSKFAQTPQPSAMDKPGNISVAGSPAYMAPELLPSNKKEDEEEEEGLKLEDGK
VGYACDVWSLGATLYALVTGRLPFQAEDPIELFRQIREDPVDIPSTVSEPLRNLLTSLLA
KSPSARPSIPSLWSDPWLTSNSTDPMPSYEENVSTEIQEPSGEEVDHALAAYRGSAFLAM
SAAAKFKGLLNAAMVRRKSEAALASSSSTDSIEGETKAREGGVMVDSPEMVSSPIASPDL
HPSSISSTPSPSSSRNNLAGRRRPAAREQTTMSSLSIGEATSRWTLSTPTSVSGGSAERE
KAGDEQEDDNDEDTEMRSRSASPTPMPASPQQQTTDEPEEWGGTTAPSAAMDQAGVVRPD
EKGGTGAGADVWEDPE