Protein Info for mRNA_7562 in Rhodosporidium toruloides IFO0880

Name: 15930
Annotation: K18753 ZFP36L butyrate response factor 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 807 PF00642: zf-CCCH" amino acids 492 to 517 (26 residues), 40 bits, see alignment (E = 4.2e-14) amino acids 530 to 554 (25 residues), 29 bits, see alignment (E = 1.2e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (807 amino acids)

>mRNA_7562 K18753 ZFP36L butyrate response factor 1 (Rhodosporidium toruloides IFO0880)
MVPSTASHSTTQPSHSQKDELPAPHPSSTVPRSLASTDSSLAHAAHKLDHHAPPLDMTLA
VAAEYDADTSDNDSHAAAADRTITSKSHVAPGPTTTRSDSPSPLFWSESGWNAGSFTFAP
FAASTNTPTAPQAAEGTVKARSKLAPTAQPFAPKLASSSPAQSQRTHRLPSLDLSTTLER
FSFPAKGTYATTTTSPTTSSPLEPCTPPPAPPNSSQFDAEGHLVSQGAKYSIADEILQLQ
SAPLGPVHPDELETLDDLFEDDLPSPAVPFPSAMASRLRTMSEQSAFNRGIEASSIASTA
SSYFPAAGIARPSFDRANTVAQLQSYFGLSTTEVNVPFPVEPYPPAPYLSRTPSYASLAG
PGAGPFASPLAAHPEPFNLLPDDPLYLEARETFINASCSSLSGPPTPLHRQTMGAHFDKA
MHTLNPLATLYGLSQEAANQLLADPAKSGVSDVVLRVAVMRGRQQQLASVQRSAMGQALP
GPSPNNRKISLYKTELCRSWEEKGNCRYGVKCQFAHGIQELREVARHPKFKSEICRTFWQ
QGSCPYGKRCCFIHALPESDSPAGSPRKGSVAGSRSASPSRGQARMTSTAITGAPSRTFG
PALSELIGSTSSSSSSVNGGSPKHSMKLDLGAAPPAASPASTSTAHFESSTLFGLGIRER
PGQAPPVFKDAPQSRLQRLASLSGGPSSSSLASLAASSSPTIPTSSAFGAPHTRHDSTHS
FMTSSSTSSSAVACSPLLTRSGSSSSLSSGAGSPVLHRVGHDWLSSSSAAANAKNAALDW
PAIEELALDDPTPLPPSSTSALAGRFY