Protein Info for mRNA_7582 in Rhodosporidium toruloides IFO0880

Name: 15950
Annotation: KOG2534 DNA polymerase IV (family X)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 PF10391: DNA_pol_lambd_f" amino acids 31 to 84 (54 residues), 44.3 bits, see alignment 2.6e-15 PF14792: DNA_pol_B_palm" amino acids 87 to 197 (111 residues), 84.4 bits, see alignment E=1.4e-27 PF14791: DNA_pol_B_thumb" amino acids 205 to 271 (67 residues), 29.7 bits, see alignment E=1.2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (320 amino acids)

>mRNA_7582 KOG2534 DNA polymerase IV (family X) (Rhodosporidium toruloides IFO0880)
MPWTVIRERLLDGKVRALSSLSSVDAAKLRFLQIFNVGPARAQAIADAGCRTFDDVLKMA
KQAEPKVKISKSQQVGLELREDLNRLIPREELVELEKEIKKAVAAAGRGFQMEILGSYRR
GSAFCSDVDLVIRHKRYATKDQTDEGKELLRKIIDQLVEHGLVKPEHQLACGASKFMGFI
RLNTKSRFRRIDIRLVPHASYPYTLLGGSGDSLLMKFLRWRAKQMGWTLNVYEMGKMYSA
VDANPNGFQPGTLKEVKDEKAIFDLLRLPYASRNVFLPCFKFCSSSSSPRHSSSRRSATI
ESGRKSISQPASSKLRISTR