Protein Info for mRNA_7585 in Rhodosporidium toruloides IFO0880

Name: 15953
Annotation: K03650 mnmE, trmE, MSS1 tRNA modification GTPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 PF10396: TrmE_N" amino acids 41 to 168 (128 residues), 107.5 bits, see alignment E=1.1e-34 PF12631: MnmE_helical" amino acids 171 to 520 (350 residues), 155.3 bits, see alignment E=5.3e-49 TIGR00231: small GTP-binding protein domain" amino acids 266 to 436 (171 residues), 54.7 bits, see alignment E=5.1e-19 PF02421: FeoB_N" amino acids 267 to 330 (64 residues), 23.9 bits, see alignment E=5.2e-09 PF01926: MMR_HSR1" amino acids 268 to 355 (88 residues), 62.8 bits, see alignment E=6.4e-21

Best Hits

Predicted SEED Role

"GTPase and tRNA-U34 5-formylation enzyme TrmE" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (523 amino acids)

>mRNA_7585 K03650 mnmE, trmE, MSS1 tRNA modification GTPase (Rhodosporidium toruloides IFO0880)
MLLRGVVRSAELFSTCSRPATRFPPASFTRPSSSSAALLPTIFAPATGNGKSAISILRIS
GDDALEVWRRMTVSARGARRTKPAKDPPERRAVLRKIVHPETSEVLDEGVVLYFPAHSAL
TAQPTLELHLHGSPALMQLLLRLLPTLNNSFRIAEPGEFTRLAFEAGKMDLTEVEGIRDL
VEADTESQRKLAARQASGLMREAYDSMRAKAIEATALIEALIDFGEDEGISEGVYQEAKD
KVVWLRDRITKYLDDGRRGEIIRSGIHLAIVGPPNAGKSSLLNWLAQREAAIVTAIPGTT
RDVVELSLDFHGFPISVADTAGLRSTKDQVEAIGIERAMEKAAVADIKLCVLSVDLLFSS
SASNTPIIDPLTLSLIDPHTLILLNKVDSSVPSSAQLEALERALESEGKEWFGKGTSEPF
ALVSVKEGKGLKELARVMRGELKRRFDLSDDLEETPIVTQERHRRHLEETLTHLKAFLAI
PAEDIVDAGEELRYAVLALGKITGAVDVEEVLGEIFRGFCIGK