Protein Info for mRNA_7594 in Rhodosporidium toruloides IFO0880
Name: 15962
Annotation: K00106 XDH xanthine dehydrogenase/oxidase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4); Xanthine oxidase (EC 1.17.3.2)" in subsystem Purine Utilization (EC 1.17.1.4, EC 1.17.3.2)
MetaCyc Pathways
- purine nucleotides degradation II (aerobic) (11/11 steps found)
- purine nucleotides degradation I (plants) (11/12 steps found)
- adenosine nucleotides degradation I (8/8 steps found)
- adenosine nucleotides degradation II (5/5 steps found)
- guanosine nucleotides degradation II (4/4 steps found)
- guanosine nucleotides degradation III (4/4 steps found)
- inosine 5'-phosphate degradation (4/4 steps found)
- superpathway of purines degradation in plants (14/18 steps found)
- superpathway of guanosine nucleotides degradation (plants) (5/6 steps found)
- guanosine nucleotides degradation I (3/4 steps found)
- ureide biosynthesis (5/7 steps found)
- caffeine degradation III (bacteria, via demethylation) (2/7 steps found)
- purine nucleobases degradation II (anaerobic) (14/24 steps found)
- theophylline degradation (2/9 steps found)
- caffeine degradation IV (bacteria, via demethylation and oxidation) (2/10 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.17.1.4 or 1.17.3.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1500 amino acids)
>mRNA_7594 K00106 XDH xanthine dehydrogenase/oxidase (Rhodosporidium toruloides IFO0880) MPAVPSPTQAFDDEASSKLTFYVNGSRVQLDAAQLDPDLSLLAFLRSQPGLTGTKQGCNE GGCGACTVVIQSVHPRTKELQHLAINACLAPLLILEGKHVITVEGIGNTDNPHPLQERMW KLNGSQCGFCTPGIVMSVYAMLRNAAYKGKLSVEDVELEGALDGNLCRCTGYAPIFQAVK SFCGDYLRPKTINGQSHGSNGASSPPSLTSSSNSSDSSSPPATPKDEEFVVPFNHGAAGL EEGFETKDTRCCGKPDACAKNVSTDVSLPAPSVLENPSTPPIDPVAGGLGRTAPMEPSRQ TPDASALVHGPGDSSKPKGCGRADCCQLGGDKKKVETTAPSAAFPQFEFKPYRPSTELIF PPGLRKHPLKPLKFGSSTQYSKTWYRPVSLDQLVELKRAIPDAKLVGGASEVAIEVGIKG SSYPACIYVSDIPELAGMSLPDFDSPAPALEFGANLSLSDLERVVRDSIAQAPAAQTGAL KAVRDQLRYFAGRQIRNAASTGGNIATASPISDLNPVWAATGAKIVCVAPASRPNDGEFE LPMDDFFTGYRQTKLPQDGIILRIVLPIPPKSLEEEGKVEVVRAYKQAKRKDDDIAIVTA CLSARVDAREKKFEDVKVAFGGMAAYTILAKKTQDFLAGKPITAETLDAALDILASEFDL PYTVPGGMPSYRRTLTLSFLFKFFVKIAKRADVVLDGVREEDVEEVTDSIHRSVSSSTRD NSDPYAQTVVGHQVPHLSGLKHVTGEAVYVDDIPPYANEGQLALVLSTRAHAKLLSVDPS EALEMDGVLSYVDWRDMPSKKANCWGTAAQDEYFFAEDEVTCHGQIIGAIVAKTKIEAQR AARKVKVEYEDLPIILTIEEAVAAKSFFQSYDRRMSRGKPTLTALAESECTLSGTLRMGG QEHFYLETMASLAIPKLESGEMEVIASTQDPTGTQRWVAQATGVPRNRVVAKSKRMGGGF GGKESRTAMLSAICAVAAKKLRRPVRCMLERHEDIKISGQRHPFLVEWKVGFTKEGKLTA LDADLYANGGYSLDISGGVADRAIAHADNAYYIPHVDVRAKICKTHTVSNTAYRGFGGPQ GMLIAETYIEAIAAHLGLDIDTVREINLYKEGQETQYHQAVVDWHVPRLLQDCKRDSDYE ARKKEVERFNQEHRFRKRGLALVPTKFGLAFGVKAMNQGSALVSIYVDGSVLVAHGGTEM GQGLYTKCVQIAAEELKIPLEAVFTSETATNTVVNTVPTAASAGSDLNGYAVLEACQELN ERLKPYREKLGPDAPMSALAAAAWGDRISLSATGHHATPNLNYVWNVQEKTGDLFHYFTQ GVAAAEVELDLLTGDSTVRRVDIKMDVGRSINPAIDYGQIEGAFTQGMGWSTMEESLWLR NGAIFTTGPGAYKIPGFADTPQVFNVSLLRDAEWPNLGSVHSSKGIGEPPFFLGCSVALA LRDALKTARSDAGIPPTEVQEFRYPLTSERLRMAVGDKLAKKAEVKPKEGEEGKGFFVCI