Protein Info for mRNA_7598 in Rhodosporidium toruloides IFO0880

Name: 15966
Annotation: K01102 PDP pyruvate dehydrogenase phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 transmembrane" amino acids 38 to 58 (21 residues), see Phobius details PF00481: PP2C" amino acids 281 to 428 (148 residues), 64.5 bits, see alignment E=6.3e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (600 amino acids)

>mRNA_7598 K01102 PDP pyruvate dehydrogenase phosphatase (Rhodosporidium toruloides IFO0880)
MPSPRLRPFAGSLRPLYTPLQPQLRRYSTPPTPVARRSLVDIALIGVAGASAVGWMVWRN
STKEEEILEGDAASFTVPVLAQTGTPGTKTLTRLTPSETNARLKENEASFAVQRRNNPVI
RYDTNNLASNSPIEDDSCCVILERDHSSKVQGDLVFFGVFDGHGGWQTSRLLSSSLVSYV
AKELDLVFRGSDTYLSLLNPKPTPSGSSLWSLFGGKSNDAPKPQLDVHDPIMQQAIKNAF
GKMDQEIVSAPIRLLEKLQKEGKLPDMKQGGIGIEQSEALNTLLPALSGSCALLAFLDAG
RNKLHVACTGDSRAVMGVWVPDGQGGGQWRVEPLSEDQTGRNPSEVARVQSEHPPHEVDT
VITRGRVLGGLEPTRAFGDARYKWPPGTQQKLANAFHPGSVRGPPRNYHTPPYVTATPEV
VTVDLSAERPKRPRKSIGSFLPVSSPEEPPATRFVVLATDGLYDRLDNQEIVSLVGAHLC
GLRGDQTRQAVLSNSVDPTAVSGPHNSHMPRQQPTRGEGEVFTFEDGNLATHLIRNSLGG
AKREQVSVLLSVPAPLSRRYRDDITCTVILLGDASKDGEGGSGGVYRREEGFETPLKAKL