Protein Info for mRNA_7609 in Rhodosporidium toruloides IFO0880

Name: 15977
Annotation: KOG3239 Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 TIGR01159: density-regulated protein DRP1" amino acids 19 to 179 (161 residues), 132.7 bits, see alignment E=6.6e-43 PF01253: SUI1" amino acids 102 to 175 (74 residues), 76.1 bits, see alignment E=1.3e-25

Best Hits

Swiss-Prot: 43% identical to DENR_DEBHA: Translation machinery-associated protein 22 (TMA22) from Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)

KEGG orthology group: None (inferred from 43% identity to dha:DEHA2G21978g)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (217 amino acids)

>mRNA_7609 KOG3239 Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) (Rhodosporidium toruloides IFO0880)
MATEAPVASTSTGKVVPQTVLYCAVCHFPPEYCEFQPKKAKCKAWLEENHPDLHAKYYSE
SALEDKLANLTVEQREALEKDLAKKEKKEEQKAEKEAAKIAASKIVVKRIERNKKKFVTT
VNGLHHFGVDLKKAAKLLANKFGAGATVSKTPQGDEEILVQGDVSTEIEEMMLDKQDKKC
VDVFGGKIEQNQISFVEVKLKKKVVAPPEVAPQGGPQ