Protein Info for mRNA_7627 in Rhodosporidium toruloides IFO0880

Name: 15995
Annotation: K01273 DPEP membrane dipeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF01244: Peptidase_M19" amino acids 39 to 375 (337 residues), 348.4 bits, see alignment E=2e-108

Best Hits

Predicted SEED Role

"putative dipeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>mRNA_7627 K01273 DPEP membrane dipeptidase (Rhodosporidium toruloides IFO0880)
MLVPKLPVVAALLCGLATAHQYTFTLPNESLLAEARGILKRHPLIDGHVDLPYVARHLCR
RPLDVLPELATGLAGHVDLPKLRQGRVGGLFHVAYAPCDAQPTGEDFLEPTNAVEWALES
VDLIHRMVEHYPEEMALARTADEVRSAFAEGKIASLIGLEGSHHLMNSLAILRLFQQLGV
RYLTLTHTCHTSFASSAGDGSPIEPVHDGNGLTAFGRELVPELNRLGMMVDLSHTSDQTM
LDALELSVAPVIFSHSGARAIHDHPRNVPEEVLQLIGPGEHQNHGIVMVVFYPSFIDPTN
ATQIRVADHIEYIASVCGKKHVGLGSDFDGMRSSVEGLEDASKFPNLIAELLRRGWTEDD
LADLIGGNLLRVMEEVEAVQRSLASQPASPAVYEKRTDLPVMWAGPGGEYLPQDVQNEVL
KRFPPRKKDEL