Protein Info for mRNA_7629 in Rhodosporidium toruloides IFO0880

Name: 15997
Annotation: K20474 RINT1, TIP20 RAD50-interacting protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1306 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 854 to 873 (20 residues), see Phobius details amino acids 1015 to 1036 (22 residues), see Phobius details PF04437: RINT1_TIP1" amino acids 295 to 841 (547 residues), 293.6 bits, see alignment E=1.6e-91

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1306 amino acids)

>mRNA_7629 K20474 RINT1, TIP20 RAD50-interacting protein 1 (Rhodosporidium toruloides IFO0880)
MSAAGLTRLAALQTAPSLETARNDARSQLSSSLPTPLVPSQLGEHLARLLEQQRTQATRL
EGELAVSREKGDQLLSEARDRVKQVRERTERLKVGHAETDQGLRAARDKLVSDLEAKDEG
ADGLTLRERLVVLSQRRKELEAAKKWFGAIVKAEDLGMTVLRSLDTGSLPQAFRAYVSLV
EYIKTVHQASESTKAAMPNGAAGMVALTSHLVGMANSVWNSLVRVLSSRLLSKLESLGWP
QPFAEPLDPYEDPRVAEFQTAFVDLLTLEHLQANNPIPGPSKRAVPASSKPKPLLALGPL
VHPLLLRFKWHFEGDRGTNRIDKPEYPLSHVLNLLTAHERFLSEDIQFLLDSNGFDHIDA
VNEFTSLLLPPLASRLRHHLPQLLTMPPILAHTVYQVVEFDQQLRSRGYRPRTWPTVLPE
GEEPEEEEGEWEGLSETILARQEWFERWLDGEREFFDQRYFEAIGAPDAWHIVSEEDYDA
DARGSGTRPTNSALRVKELAEQLADRYRPIPLRHTLPFLLTLHLPLLQSYAARITSSLDA
FESLSFGILPGALGQTTAATAGVGGVVRLVRAGVSARWMSEKCAEWGEDAFFLTLYDYLS
SSASTPGKLDRGLQDAADDVLDNSEGTVFDREHKVFENLADRSEELIVRHCAREVSNELK
PYYSKRWEEVAEEDATDRSLSPELIAPLSLLSSLLSTLVQSFPPATRTTLYRRIAGLVSQ
SLYDRLLVSHGWTESSAQQLQYDLENGFLVAVKEAGLPQRGIMRGWEVARGGATVLALPS
QASQQGGYVPGGDWTFSRVMQVAFDDSVTEEEGGKFAEMMDDLGVGEALTKSEVQSLLRR
RPECWSRSSACRPSWPLVALVALLSLFCSRPLHSSAFAGHLGKPPAQDALPPAYRDPEGY
LNDPRFHRTTTYRPSYSSSSSPPHTVSFAVAGSPSADAPTVVWLNGMGGHRLAAVLLDGL
FATKGVRLVTLDRPSGGKSTPVPLADRVQASHEAFLAILAELDIKRFSILSHSNGLIYTL
FTLLNLPSDLTVLSWTLSSPYVPPWLSGSQLLSLARWVPSPLTSRLGTLLGGLQKVAEPV
MRSAGWSSGVVKDWSSAFVSMGTSVPSEPAAAGQAPNGNGTGEVDESQIEPELLPPPKQL
AGFRRLNARRPPHKKLFGGEFIPPGMFNEGMKMAVSEGLDAMGLEAMVCLRQGDGARWGW
GEPEEGASEVREEVEAKLYERGFAALKAQLTKTGRQVEMSVWYGEDDALVPAKGRVYLRG
LLVDSLGMMEADRWKEIEDAGHDHTLGLSCVMEPLLDDVVRVHQRA