Protein Info for mRNA_7633 in Rhodosporidium toruloides IFO0880

Name: 16001
Annotation: KOG1947 Leucine rich repeat proteins, some proteins contain F-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 980 PF13516: LRR_6" amino acids 627 to 646 (20 residues), 16.9 bits, see alignment (E = 7.5e-07) amino acids 678 to 700 (23 residues), 12.9 bits, see alignment (E = 1.5e-05)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (980 amino acids)

>mRNA_7633 KOG1947 Leucine rich repeat proteins, some proteins contain F-box (Rhodosporidium toruloides IFO0880)
MSLPPTTLPSRGTIVGSQVGESCSAGRTSSRTYATVAASSLHTVAGGAQLETVGAGEGRS
AGHAGSAGGGAEAGGSTSGSTGPANAPQSVTRSGQSEAVSSEALDRALAGLAAGPSSLPS
SPLTTTPSAPSSRLEASMATSPSAAPPASTTVPVPTPSRPDGRRSRLSSFKDRMTPYRPS
SSGGSDGEGAVRRPGMKRRFSRSLTSLVSLVPPRADDTADDAADDETTKLSKWRAKGKAK
LIKAFKPPQNSSGSPSRAGTPGADDHDVFRVSSRSRSYSAPLFLPRHVLEEEMASRRVPP
TSPPVAHAREEDDSAKDDSPFPSAFNTCPSSPILDSGFASSTPNPAIAATLDPSSLVFEL
VAEPEPEPDLFARLPREVQLRIFRGLLEVCEEEWRKEVKEGRWTGEKACERWGDGRVRGR
RELVKMGRVCRLWLSLSLDGQLWPTAPAASLLGATSYSSASLLSLAVGAGGFVKTFDARG
LGKSLDWTTLAWMIVPLDGASDTGLTNLTSIDLTGCTSLTSASLTSLLSHSPHLLRLAVP
NLRCVDNSHMATLGSSCPHLAHLDVSRCPNLRGPALQKLPHPPQPPQNLLSRPFTIEDLL
DGLVTLEAAGLSGVNGSDLASFLSRHRRLVTLDLSWCNGITDNGLKTVVQQLSPSASAAR
PSQAAALTLSSGPKRVFPTLRHLNLSACQSISSVGLSHLAGTVPNLEILELSRLGSRLRS
DGLARLVASCPKLRKLDIEDADQAGDDVLHALVGVGDAVGAANLEHLVISGCTSLSDPAI
AAVVRSCSKLRILEADTTAISDRTAKEFVQLARERASQAQKDAVSRKGDVDPLVASKYPA
VLSLLDNRQTGRRLSRDFGSANLRGRIGQRGYWTNVVGGYLDDDESAEAQEPPARKKLQA
PLSECDESRVVVRSFYSNLAVDAALAVREATAKKRQAKAGGGGGEPRQGALRTRAMSDSE
VLRRTDTGDDEDGRVACVIS