Protein Info for mRNA_7635 in Rhodosporidium toruloides IFO0880

Name: 16003
Annotation: K02865 RP-L10Ae, RPL10A large subunit ribosomal protein L10Ae

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 PF00687: Ribosomal_L1" amino acids 26 to 213 (188 residues), 156 bits, see alignment E=5.5e-50

Best Hits

Swiss-Prot: 78% identical to RL1B_SCHPO: 60S ribosomal protein L1-B (rpl101) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02865, large subunit ribosomal protein L10Ae (inferred from 84% identity to scm:SCHCODRAFT_65379)

Predicted SEED Role

"LSU ribosomal protein L10Ae (L1p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (219 amino acids)

>mRNA_7635 K02865 RP-L10Ae, RPL10A large subunit ribosomal protein L10Ae (Rhodosporidium toruloides IFO0880)
MSASKLSVSSVRSSIAQILTESSGEKKRNFVETIELQIGLKNYDPQRDKRFSGTIKLPHV
PRPRMSICILADAADIDRAKLIELEYMSVDDLKKLNKNKKLVKKLAKKYDAFLASEALIK
QIPRLLGPGLSKAGKFPTPVSHGEDLGNKVTDVRSTLKFQLKKVLCLGVAVGHVEMDQEQ
ILANTMLAVNFLVSLLKKHWQNVKSLNLKSSMGKPQRLF