Protein Info for mRNA_7658 in Rhodosporidium toruloides IFO0880

Name: 16026
Annotation: KOG1398 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 529 transmembrane" amino acids 110 to 129 (20 residues), see Phobius details amino acids 141 to 167 (27 residues), see Phobius details amino acids 187 to 203 (17 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details amino acids 392 to 418 (27 residues), see Phobius details amino acids 439 to 455 (17 residues), see Phobius details amino acids 484 to 505 (22 residues), see Phobius details PF15982: TMEM135_C_rich" amino acids 331 to 468 (138 residues), 30.4 bits, see alignment E=2.7e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (529 amino acids)

>mRNA_7658 KOG1398 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MDSTGAQDNPPSRSTNPNSPRRTPRFDLAPLSSLSDTDTAPSSPEPLATPTLAESYGQLK
KNLSFKSLRDLEMRELKGHIYRRGKPSDGTRYRPKNSDEVFAHALKGGLRSFVLGTSLRA
AVNLVITLLRLTRKKGLPPAVIIHAVFGPDVARFGGMLGLFSFLYKWTLHTLRLYNPGRL
GPGQSEPWHAAVAGLVSGASVWAEKPSRRVTIGQQMFVRGLQGHYNLLKSQGRIRVKNVS
VIVFGLSCAQIMYSWLMAPEALPPGYRRWITQASRVSEPCLPVNLSAYRSGTFDPNVARK
TLTWGRGATPKNRVLIESYAKKAEMGDFGPPFAPCEVVHPWADTCTWNSVDRWHQVFRWI
APVYAGLHFIPPILLRRKAWMRDPSTYLLRSLIGTFRSCSFLASFVALFQGLVCLQRHFY
NRYHGVVPEWIEKIVMHKSYYWFSGFATCLPLFLEERKRRRELAMYVLPRGLESMWSILR
RRKWVPFVPGGEVLLTCVGLSMVMQSYQHSPENLSGLVRSMLWQIIGPA