Protein Info for mRNA_7664 in Rhodosporidium toruloides IFO0880

Name: 16032
Annotation: K07904 RAB11A Ras-related protein Rab-11A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 TIGR00231: small GTP-binding protein domain" amino acids 8 to 167 (160 residues), 152.7 bits, see alignment E=3.9e-49 PF00025: Arf" amino acids 10 to 138 (129 residues), 44.4 bits, see alignment E=2.6e-15 PF01926: MMR_HSR1" amino acids 11 to 116 (106 residues), 29.2 bits, see alignment E=1.7e-10 PF00071: Ras" amino acids 11 to 171 (161 residues), 206.5 bits, see alignment E=3.9e-65 PF08477: Roc" amino acids 11 to 125 (115 residues), 117.4 bits, see alignment E=9e-38

Best Hits

Swiss-Prot: 79% identical to RB11B_MOUSE: Ras-related protein Rab-11B (Rab11b) from Mus musculus

KEGG orthology group: None (inferred from 82% identity to cnb:CNBE1790)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>mRNA_7664 K07904 RAB11A Ras-related protein Rab-11A (Rhodosporidium toruloides IFO0880)
MGDSSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVEGKTIKA
QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHATYVNVLRWLKELRDHADSNIVIMLV
GNKSDLRHLRAVPTDEAKLFAQENGLSFIETSALDASNVESAFQTILTEIYKIVSQKQLE
ADPISSQRPGAGSTIEIAPSANDGGQNPSGKCC