Protein Info for mRNA_7666 in Rhodosporidium toruloides IFO0880
Name: 16034
Annotation: K20184 VPS41 vacuolar protein sorting-associated protein 41
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1099 amino acids)
>mRNA_7666 K20184 VPS41 vacuolar protein sorting-associated protein 41 (Rhodosporidium toruloides IFO0880) MPASSRASSVRSLGTSPLSPPRPASSVLSAVSPPSTSALPAMLDVPNGNSSAKGKGKQRA VDVVPSTEGLLHSVTSGGSTDARRKREGDRGTGDESESESEEGEEEEEEEELEEDGSTPS PEETEEERPPPSPRLEKRIRDGVGEDEEKGKEQAEEQEEDEEGEAGSSAEEDGEGDEDDD EPTLKYARLGGSTTNILSKDTASAIAVCSKYTILGTHNGALFVLSPEGMLIKRFHPHSAM INDLSIDSTCEFVASASMDGRVAIQSLTTSEAHVFDMQRPMRCVALEPFFGKRNTRQCVS GGMAGNLILSEKGWLGQKDVTLYSGEGPIWAVEWRGTFIAWASDAGVRIYDTATSQRITY ISRAEDSPRADLFKCNLRWRDDRTLLIAWADVIKVAVVKERESKRVVPGLPSATELYVEV SAIFQVDCMISGIAPYGKNGDLLVLAYTTEEDEDNEADDSSAQRRKAGSRPELRIISPDG EELSSDAISLRNYDRFQCRDYSLCPSANGQSFLVVSPEDIVVAQTRDESDHIVWLIEMQR YEEALHALEKSGLGTVGGFDVTDVGKKYLEYLVEEGEYDKTAASCPKILGINAKLWEDWV FLFAEKGHLETIIPYVPTHDPQLSRLVYEMILAHYLRHDEQALLRTIHAWPHEIYDVSAV ILAVKNQLDRTRASDSHVLMQALTELYILNRQPGKALPYFLKLRDPHVFTLIRDNNLFTD IQDQALQLIEFDEDLRKNDKALESESRHGTAIELLVDHTHSIPIPRVISQLQESRKYLYM YLDALFDKDPHLAFDYSDLQVDLYAEYDQKKLMDFLRASNYYSLERAYKICDNRDLVPEM VFLLGRMGDNKRALNLIIERLGDVERAIEFAKEQNDNDLWEDLLKYSENKPRFIRGLLEN VGAEIDPIRLIRRIKNGLEIPGLKPALIKILQDFQLQISLMDGCRTVLYSDCRDLALSLH RSQTSGFLWTGDTPDQATGEPIFPHLSGAPVPASLPFGVRFLSGPAYLGTSAFPSLASAD TTLSSLSPIQPVTKRDQLVAASLLASLSTPDYEEEDFDVRPVEDAERAMEDKVATVKELK EKLVQERRRSARAAVRVDV