Protein Info for mRNA_7696 in Rhodosporidium toruloides IFO0880

Name: 16064
Annotation: K11269 CTF18, CHL12 chromosome transmission fidelity protein 18

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 PF13401: AAA_22" amino acids 136 to 230 (95 residues), 27.7 bits, see alignment E=7.6e-10 PF05496: RuvB_N" amino acids 140 to 165 (26 residues), 22.9 bits, see alignment (E = 1.7e-08) PF00004: AAA" amino acids 140 to 245 (106 residues), 38.3 bits, see alignment E=4.4e-13

Best Hits

Predicted SEED Role

"Replication factor C large subunit" in subsystem DNA replication, archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (719 amino acids)

>mRNA_7696 K11269 CTF18, CHL12 chromosome transmission fidelity protein 18 (Rhodosporidium toruloides IFO0880)
MLEKPYHQLLREIEKDAAMAKKQREADATNAALLASSPLKTSRAAATPVETALWTDRYRP
KRFVDLLGDERVHRTALLWLKEWDACVFRGTSKATAAAELKRERSKKRAREGTFGAGGAE
GGGFEEAAPDPYGRPQEKILLLSGPPGLGKTTLAHVLARQAGYQVLEINASDDRTSRIVD
ERIRNAVDSQALTSGWKPGRGGAGGKGKEREREEGGVRPTCVVVDEIDGAGGGGDTSFVK
TLVKLVTEGSSLKKPSRKGKGKQQRPLLRPIICICNDLYAPALRPLRPLAKIIRFNPPTA
PMLIKRLRTICDVEGLSTENKHLSLLVDVAEGDLRSCLNTLQFIKRNGSTVDESAIRSSA
LGQKDTGTSSSQVLDRLFKKPPRKRGAPSGDGVGADERYVARIVKDVQTSGEYEKIAQGC
FENYLTARPTNNEALPRIQQALDWIHLYDQLDNRLRSEREYELLAYVPYSFVAWYPLFSS
QVPNPVELPKTDYEMYLKRVAHQEVADAFAASVPQNLKTLFSGPDIVAELLPLLNRIVAP
DLKPVNSQVVKNDERARLMRLVNTMISTKLAFVLDKSEDGQLSFKLDPPIDVFVHFDGKR
PADIAPGRYAVRQMVNREIDAELLRRGDSPAGPTKTASEILSAYKTNPAKAAAPVAPETK
QAVDFFGRAILPKACSPAAQGDSSTTAPPPPKRVRQAMYRFNEGFSNAVRVNKKVSDFF