Protein Info for mRNA_7707 in Rhodosporidium toruloides IFO0880

Name: 16075
Annotation: HMMPfam-PAZ domain-PF02170,HMMPfam-Piwi domain-PF02171,HMMPfam-Domain of unknown function (DUF1785)-PF08699,ProSiteProfiles-PAZ domain profile.-PS50821,ProSiteProfiles-Piwi domain profile.-PS50822,SMART--SM00950,SUPERFAMILY--SSF101690,SUPERFAMILY--SSF53098

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1015 PF16486: ArgoN" amino acids 97 to 247 (151 residues), 57.3 bits, see alignment E=5.5e-19 PF08699: ArgoL1" amino acids 259 to 317 (59 residues), 49.2 bits, see alignment 6.5e-17 PF16488: ArgoL2" amino acids 487 to 515 (29 residues), 27.5 bits, see alignment (E = 6.4e-10) PF02171: Piwi" amino acids 637 to 954 (318 residues), 189.3 bits, see alignment E=2e-59

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1015 amino acids)

>mRNA_7707 HMMPfam-PAZ domain-PF02170,HMMPfam-Piwi domain-PF02171,HMMPfam-Domain of unknown function (DUF1785)-PF08699,ProSiteProfiles-PAZ domain profile.-PS50821,ProSiteProfiles-Piwi domain profile.-PS50822,SMART--SM00950,SUPERFAMILY--SSF101690,SUPERFAMILY--SSF53098 (Rhodosporidium toruloides IFO0880)
MPGRGEHSYQPRGGGAGWNGGGRGGGGGGRGGRGGGRGGYEGQQGGAPRQQSIPRPSQPP
ATRPVTVASQQVTLGQAAMPEPLTRPHYIIPEPTNGITLSTNCFDLTVSNNVSNWYKYQV
IITADDRTDAQGNVRPARGPPPKSVLRLVWQEVERREAQQPTHFGGIRPAFDGRSAAYTN
QPLPDPGSGVIRISGIPAPDRPRMTFTITLSNVIPLPLASLRSYYLGTASFYFGEVAEAL
QALNTVLSQGPSTEFFGTRTSFFPTDSAAQRLGGGIRKESVRLNGYIELLRGWFQSVRTC
ERGLQVNINTTSTAFFQPGTMVDFAAAYCETNGRNVRNGLDALIVGRLDGQLVTRINRLV
CKKIEVTVRRGPGASPLKMKIRGRGILDKRPCDHFFTTEEGETDVKEYMEKHFGVRLQHP
NLPLVEVRPNIVYPLEMIWVDEGNKYLKRLSPLEQGKASDFATLLPPQKLAAILSVRRDI
YRTVVEPHLTNFGVQIAPQPKQIQARLLPPPAIEYKDSKFRQGDNPQRQWTHVDPANGEW
RMNVRGNFAAENFIAGASLGSFVVVVPSQRDIQAVETWLDALFRNSHIFGMNLKDCPPRP
FPRDVFHVRQPGIDPEKTVHHAVEQARMFFRRRPDIIFWVFNEANSPDYNEFKRATTVQG
IASQAIQQSKLHTTGVQMMINCALKVNGKLGGHNHRLEAATVGTFLRDQKPMIFGADLTH
EPDQPSVAVVVASMHGANVLYEETISVQGLLEPTPAAASAGARPRKQEMIENLQEMVLFL
LRRRALSLRALPPVSMLMFRDGVSEGEFATVIAVEVNAFHQALRRFKADAEMRQLFGSAL
DAWKPKLTVIATVKRHHIRAFVDGGQASNIPPGTFFDTGVTDARSFDVYGAAHRALIGTT
RATRYVVLHDEQGLSTDDVEQIANSLCHSYQRTNKAVSLPAPVYYADLIARRVRPWFLPH
DDTRSSSGHSESTRQSREADLVGARARLDDTVHGRNAFRGENSERAKRPPAMWWL