Protein Info for mRNA_7739 in Rhodosporidium toruloides IFO0880

Name: 16107
Annotation: K20476 RIC1 RAB6A-GEF complex partner protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1215 transmembrane" amino acids 945 to 962 (18 residues), see Phobius details amino acids 974 to 991 (18 residues), see Phobius details PF07064: RIC1" amino acids 872 to 1122 (251 residues), 338.1 bits, see alignment E=1.7e-105

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1215 amino acids)

>mRNA_7739 K20476 RIC1 RAB6A-GEF complex partner protein 1 (Rhodosporidium toruloides IFO0880)
MYFPSPLPTTRLSISTSEVPVGPSPSAKTSVYKTPGRPSKGKFKDSLGGVQEEEGEEILS
IVRGPEVGDGENAGASRQTLWVALGREEVSVWSIRPKVVLAKLRRTPISLRTHGSNAAVH
FHGPSRLIVTTSSGHHLLYSISPVVTNANKKGANDVYVLPGGEKAAQAWPKGPGEGQELE
GIVLRGEGERGMAIGDGVACVCVTPSDLLVAVQDPPSLRVIPFPTILSEASASTSRLPTF
GRPAPPPVQRRGSGWDSLPAGLAGEGESEAVVLDEWDWLVGRDRKDVTISTLTPLSSSSS
ASNAAPPPPYRTLSRQSSYASLSSHSLPPPTTPRQATTFVMTTSDGRAYIVRWAPPAASH
GASTPLHTPAGASTASLLSPLSPTDESGLNSAANRWTWTGVCFHPAPPGERSSEEWVAAQ
EKELDKGRGASAVDLNEPMGLVAVGCEDGTIAVYSLEPPPGQVRRSKRSDRLSVPTLSHT
SSLRDSLNTTASALATGRVQCLAWTSDGYGLACGWSLGWSVWSVYGRLGSWSVAGSLDGG
GYGVEGEKSDSFEDGFMMGVRALFWSPGNTELFVLCPPPVHPKRKPHDEQLFVVPFAKSA
VTAAHTPDNTKNAFLQMDDRVLVYRGADQPDMSVINPESDVWQHIKIPAPYIATQYPIRY
AVISSDARLIAVAGQRGLTHYNALSGRWKLFEMEKEEEAIKVVGGMAWWGNVLIVGCLEG
GQYQLRLFSRDKPLTLADSLEIVPLDSEPLVLSVFDSSLLVYTADNTFHHFLIRHLRGSS
PRLRVCGSIGFEGVVADPRKVRGLSWLVPKSQQRFGDPADDLNVATIIFLISGRLVLLRP
RRAASEEVKYDLQILADQVEFYWTHLSGIGSLENSLWAWDGHKIRIWLDALTIEKVRVDA
RRDAYETVKESVGISLDFYPLAVLMDKGIIVGVDQETSLRRSLDFAIFRIITTTHLFIHH
ILRFHLDRSQSREAVLFASFYQHLVYFAHALEILLHDVLEDEADAQKDAQSNALVLPRVI
DFLDYFDECLQVVVNCARKTEITRWEFLFDIVGKPRDLFEKCITSGFLKVAASYLLVLHN
LEPLEQSSKDTMRLLKTAMDAGEWTLCRELLRFLYSLDRTGAILRTALRESNALPPDYFP
AVTGYEPPETDDFRRALALSSSPPTRLSFSASSQGRRSEERAVPPTGRLGGLGVGGLEER
GMPSGAEGGGRSRMV