Protein Info for mRNA_7759 in Rhodosporidium toruloides IFO0880

Name: 16127
Annotation: K11824 AP2A AP-2 complex subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 978 PF01602: Adaptin_N" amino acids 25 to 578 (554 residues), 433.7 bits, see alignment E=1.4e-133 PF02883: Alpha_adaptinC2" amino acids 746 to 850 (105 residues), 55.5 bits, see alignment E=1e-18 PF02296: Alpha_adaptin_C" amino acids 856 to 969 (114 residues), 143.3 bits, see alignment E=5.3e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (978 amino acids)

>mRNA_7759 K11824 AP2A AP-2 complex subunit alpha (Rhodosporidium toruloides IFO0880)
MVKDDMRGLTQYIADLRACRVRELEEKRINKEMAHIRQKFKDGNLDGRQKKKYISKIIFT
SILGYPVDIGHMEAVNLISSQKYSEKQIGYLALTLLMHENSDIVRLVVNSIRKDLDEMNE
TTNCLALHAIANVGGAEMAEALAPDVHRLLISPTSKSFVKKKAALTLLRLYRKHPDVIPA
ADWALRIVSILDDQNLGVVVAVASLVLALAQDNLEAYAICYQKAVNRLSKIVLHHEYSSD
YLYYKIPIPWLQVKLLRLLQYYPPSEDPTLRLVLHNVLERILKNSGEQHRNVQQNNAQNA
VLFEAINLAIHLDTESVVVQQAAHLLGRFITSKETNVRYLGLDTMAHLAARSDNLEAIKK
HQATITQSLRDKDISVRRRGLDLLYSMCDTSNAKAIVGELLKYLAVADYTLREEMVLKIA
ILTEKFATDYEWYVDTVLTLMSTAGDHVGEEVWYRIVQIVTNTEELQEYAARKVFEVLLK
PSVHENLIKVGAYVLGEYGHLIADEPGRSPIEQFQIIHSRQNLCSNTTKALLLTTYFKWL
NLFPEIHEQLVGVFEKCSHVLDAELQQRACEYLAIARMPNEDLLQVVVDEMPPYPERESA
LLSRLIKKTGDTHDKRTWYIGGKEVNQGQDEARYQSFGRRKGREGGVLAGGATHEALTSS
AQPTPGSVADDLLGLDLSGATNGSQPPTPADVASPASPTTPTAAAASSPVTATEPLLPAS
ASTPTPRKQVTHGADRWLSRLVYNTEGVLWEDAQLQVGVKCEFHGHLGRIALYFGNKMSV
ALESFTVTIDADDPDALKVTFPKIPTPHISALSQVQQLIHVECRDVFTTPPLLNISYLAG
SLQTLTLRLPVWLTKFVEPVKLESGAFFERWKQIGGPPREAQQIFGIVLDPSTGKIDAAK
SRRVVGGTRLGVLDGIDPNPNNIVAAGVLHMSSAGKVGCLLRLEPNAEAKLCRLTVRTTN
DGVSQEMLKVLQGALATK