Protein Info for mRNA_7784 in Rhodosporidium toruloides IFO0880

Name: 16152
Annotation: HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 624 transmembrane" amino acids 330 to 339 (10 residues), see Phobius details PF07719: TPR_2" amino acids 78 to 108 (31 residues), 23.4 bits, see alignment (E = 4.4e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (624 amino acids)

>mRNA_7784 HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452 (Rhodosporidium toruloides IFO0880)
MDTSLEDIKNKANAAYSKKNWQEAVALFGQAVDLEQAGPAKATLLAKRSAAYVRLENFES
AHTDAALAASADPTSPLAQARIAEACIKLKDYEGAEQAYDRAIQLSPEGAARKRYKDAQK
SAQRASRHEAAQTRQAPPPAPTPAPPRSIPSHTSSARNPRTAPPSAYSSTPRYQSARLQI
YRPGTSWWDRVAAAVEKEGFKPESGGGVEVALAAWEVCEEGFARLHESVSQVQVAGMLQV
TTSDNSPLVAFAECILTMDDAFHLTASPFGDMPPLTKISTLIEQQSRQGHLLKYIERKQG
YSARQSIDDLTARLKTESRSDIRTLTASLILGRIFGSFVLFEMGSYSEAIEGWRNVLDLL
EAGNAVWAHEALEERGKVFSPTILRGVRVALMNTIMVGHGKATTDSERCKFKLDEMEDLA
NDVLDEFLPDSLLAGKPPVYRTAWEASFLAYCLGYAYRAEAPLRDMRMGVPAIADLDAAR
EVSDWYDAATSAMPFDWWEKRTILWAGLRMRLYAGGWSVQELLDRVEEAKRVDEFASRFF
GPGPSPNHARDLVLYCVEACDDSLRMAAQPTYSGPKLTRQSTIKPVPRLWCSPGFDRNTV
LTKEFWERPEMQGDIGCFDEYRMH