Protein Info for mRNA_7808 in Rhodosporidium toruloides IFO0880

Name: 16176
Annotation: K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1133 PF00780: CNH" amino acids 29 to 186 (158 residues), 22.6 bits, see alignment E=1.5e-08 PF10366: Vps39_1" amino acids 737 to 837 (101 residues), 100.1 bits, see alignment E=1.8e-32 PF00637: Clathrin" amino acids 876 to 985 (110 residues), 30.3 bits, see alignment E=7.1e-11 PF10367: Vps39_2" amino acids 1017 to 1125 (109 residues), 94.5 bits, see alignment E=1.1e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1133 amino acids)

>mRNA_7808 K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 (Rhodosporidium toruloides IFO0880)
MHSPFSLAPLIRPEVLGTEQITATLLHADRIVLGSERGTLLVFDLSRASTSTAPPTATLV
NRHDGFAKKSIEQLGVIKELNALVCLSGGDLTLHSFPDFALLSSFASQTKASASVFALST
EVHHPAANADVPRAVPEIHTTLAIACKRRLLLLSWVDGTWNPQVEVSLPHQIRGMAFDGR
RLVAGFSTGEYGVITLSPLEGKGAGQPPTLGDLFSPPLPLAERPSRTGVPGLGGLGGLGN
VVSLGALNALSKKLEKNGVVRVPRPARRQRPERSEEKKVESEWLWAEEWGWQREKVDEAG
EVLVVRDNVVLPLSSTGKPRSADRPSASAPSISYHSSVDEALVCPPYVVSLVAPAPPAPG
TTASSATPHYSLAVHALETLQPVQTLSLPPTASSPPASIAESTLSALSRSTAPAKPATLA
RLLTVSASTPKPPLLVLTSTPATTSAPAAAAGASEQTLWVATMDSWQSQLEELGEQGKWE
DGIALLRGSFDILTDPLPPPLSRRLATLHALHLFKTHRYDLAIDAFIALDISPARVVCLY
PVPISGKLYREASAHEEVFGGRPHARVQAAHEEAEEKRRAEEEEQRSAAQQANQARGSPA
TGSPARPRKGVLAGAAEDDDAASIRSVGSRLTGKKSWLRDREPSTTLDEIAENAARERDQ
QEKIAAQDYSRSVDELVRYLTDRRQKYAQAFAALLPSSRPTPSSPRPAADADELLSLPNE
PLTKLSPDQLARVAQVVDTALFRSYLATKPVMVGPLCRIENWCEVAEVEELLLDAKKYRE
LLDLYNGKNMHEKAVELLKRMSEDEDDPEEKVEPTVRYLQKLGPTHLAVILDASRWVFEQ
DVESGLQIFCADLEEVESLPRHAVMAHLEGVGRDVCIKYLEHIIWQLDEQGADFHEKLIE
LYLQAVQAPSTGRDDESYRKLLDLLETSKSYRADRILGRLPSEDMHEVRAVLLGRLGRHE
GALQIYVYQLEDQATAEQYCKRVYDSDESMRPTIFHLLLRLYLRPRQNHPLFVGPALALL
STQAARIDPIEAFELLPPLVAVSDIKVYLEKTLRRSNERARETKMVKAIGRSWVDQADRE
VVDLEERRVKVTEGRVCPVCHKRIGNSVIAIHNPHGEVTHYQCREDFQRTRAL