Protein Info for mRNA_7810 in Rhodosporidium toruloides IFO0880

Name: 16178
Annotation: K02358 tuf, TUFM elongation factor Tu

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 TIGR00485: translation elongation factor Tu" amino acids 16 to 413 (398 residues), 640.4 bits, see alignment E=4.6e-197 PF00009: GTP_EFTU" amino acids 23 to 211 (189 residues), 185.2 bits, see alignment E=2.1e-58 PF03144: GTP_EFTU_D2" amino acids 240 to 308 (69 residues), 61.1 bits, see alignment E=2.3e-20 PF03143: GTP_EFTU_D3" amino acids 313 to 412 (100 residues), 94.4 bits, see alignment E=1.1e-30

Best Hits

Swiss-Prot: 68% identical to EFTU_GRABC: Elongation factor Tu (tuf) from Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)

KEGG orthology group: K02358, elongation factor Tu (inferred from 82% identity to mgl:MGL_3306)

Predicted SEED Role

"Translation elongation factor Tu" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>mRNA_7810 K02358 tuf, TUFM elongation factor Tu (Rhodosporidium toruloides IFO0880)
MFTAGPVRGYAAEAGGKYERKLPHMNIGTIGHVDHGKTTLSAAITKVLAEAQGKGKVLAY
DQIDKAPEEKARGITIATAHLEYETANRHYAHVDCPGHADYIKNMITGAAQMDGGIIVVS
ASDGQMPQTREHLLLARQVGIKKLVVYINKVDQVDDPEMLELVEMEMRDLLSTYGFDGEN
TPIVKGSALAALEDRDPKIGKDTIIELMKEVDAWLDQPPRDLDKPFLMPVEDVFSIQGRG
TVVTGRVERGTITKGSEIEIIGMGASFKTTLTGIEMFHKELERGEAGDNMGALLRGVKRE
QIKRGMVIAAPGTIKPVKKFEAQCYILTKEEGGRYTPFMNNYRPQLFARTSDITVAITFP
EGTDNADEKMVMPGDNVDVVCEVVHDFAADVGQRFTLREGGKTVGTGIITKIIA