Protein Info for mRNA_7812 in Rhodosporidium toruloides IFO0880

Name: 16180
Annotation: K12876 RBM8A, Y14 RNA-binding protein 8A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00076: RRM_1" amino acids 107 to 175 (69 residues), 55 bits, see alignment E=3e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (219 amino acids)

>mRNA_7812 K12876 RBM8A, Y14 RNA-binding protein 8A (Rhodosporidium toruloides IFO0880)
MLRCNRLVIGTCSAQSTVRRSTCKRKREPLLVASSLRSTFTTPQPPPTMQADRMELEESA
AASTTRKGRLIADRDDRDEQPASFAGVGAGLGDTASRAQRSVEGWIVLVTNVHEEASEDD
LMDRFSDYGEVKNLHLNLDRRTGYVKGYALVEYETKDEALKAIQEAPQEPFLEKVLSCDF
AFVQPPAGLPAAQEKTTSRRSGRERSASPVRKPLVTRID