Protein Info for mRNA_7860 in Rhodosporidium toruloides IFO0880

Name: 16228
Annotation: HMMPfam-Diacylglycerol kinase catalytic domain-PF00781,ProSiteProfiles-DAG-kinase catalytic (DAGKc) domain profile.-PS50146,SUPERFAMILY--SSF111331

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 transmembrane" amino acids 53 to 69 (17 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details amino acids 206 to 220 (15 residues), see Phobius details PF00781: DAGK_cat" amino acids 38 to 158 (121 residues), 58.5 bits, see alignment E=2.7e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (453 amino acids)

>mRNA_7860 HMMPfam-Diacylglycerol kinase catalytic domain-PF00781,ProSiteProfiles-DAG-kinase catalytic (DAGKc) domain profile.-PS50146,SUPERFAMILY--SSF111331 (Rhodosporidium toruloides IFO0880)
MASEQIPTEPVDAPSFLAQHAPHIDLTQTTKTPRPPSHLTVILNPSAGSRHALQLWANLV
QPILIYFLSLSHNNSWLDWSGEVEETRDVRDGERIGREIARQARKGRKEVLVVFGGDGTV
HEVLNGVLMRQDGEVSEGVEVELVLIPTGTANALYYHLFPPESPSYPSTTPIALLYCLLA
FLSPTSTSALPLSLALNTLPSGEKVLTTVVSSTALHACLLHTAERLRHTRPELEGTERFK
VAAQMEVGRWWDGHLTLRLAKLYDPSTKSWVKQEEKVEGPFSYLVSALTSRFEQSFLVAP
FRSPFSPLAPEAGEASIDVVAIRPLRRRQTRELVEAGEGERAREEFARTLWDVTGRIYEG
GKHVDVLYDDAEGGEGGQGEGREEKGRGVVEVWRCEGLEWVPPQPQRTPPKTFKTLPQTR
TRHSSPASSASTAPYTTSVRTVLCIWKRSREKE